View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12937_low_2 (Length: 457)
Name: NF12937_low_2
Description: NF12937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12937_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 88 - 338
Target Start/End: Complemental strand, 43367571 - 43367317
Alignment:
| Q |
88 |
gagagaggtagatgatcatatcctaatcctaatatagtcttataaaagtaataacgtgtgaggtgaaattaggtgtctagtctagaagtatatgatgatt |
187 |
Q |
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| T |
43367571 |
gagagaggtagatgatcatatcctaatcctaatatagtattataaaagtaataacgtgtgaggtgaaattaggtgtctagtctagaagtatatgatgatt |
43367472 |
T |
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| Q |
188 |
agttactaataatggttagaagagaagtagtagtaagatgataatgattgacagatatggtgaatta----gataaggattgtgtactaattgatgaaaa |
283 |
Q |
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| T |
43367471 |
agttactaataatggttagaagagaagtagtagtaagatgatgatgattgacagatatggtgaattagatagataaggattgtgtactaattgatgaaaa |
43367372 |
T |
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| Q |
284 |
taaaatcaacggataaaaaagagtctggtaatattactagatcacacctcaccgc |
338 |
Q |
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| T |
43367371 |
taaaatcaacggataaaaaagagtctggtaatattactagatcacacctcaccgc |
43367317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 43367260 - 43367217
Alignment:
| Q |
408 |
cacacgcattatggaaattctaactacaacacatattcatctca |
451 |
Q |
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| T |
43367260 |
cacacgcattatggaaattctaactacaacacatattcatctca |
43367217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 382
Target Start/End: Complemental strand, 43367312 - 43367283
Alignment:
| Q |
353 |
ttacggttacgacgttcttctgttcaaaag |
382 |
Q |
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| T |
43367312 |
ttacggttacgacgttcttctgttcaaaag |
43367283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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