View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12937_low_4 (Length: 355)
Name: NF12937_low_4
Description: NF12937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12937_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 28386019 - 28386356
Alignment:
| Q |
1 |
ctgtatgaagtaaattgtttgttcgaagggaatgaaagatcgagacagcaaagagagacgatccattaaacgttagattcgggatttgaagcttgtgggc |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28386019 |
ctgtatgaagtaaattgtttgttcgaagagaatgaaagatcgagacagcaaagagagacgatccattaaacgttagattcgggatttgaagcttgtgggc |
28386118 |
T |
|
| Q |
101 |
caagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggttcattgaggagcattgcgcca |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28386119 |
caagtcattagcccatgagaatgcggagtcagcaataatacaatccggtggattcttctcaacgaaatccccaaccgcttcattgaggagcattgcgcca |
28386218 |
T |
|
| Q |
201 |
ttatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28386219 |
ttatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtgaa |
28386318 |
T |
|
| Q |
301 |
ggcggagggcggcagatgagagagttttagtaagggat |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28386319 |
ggcggagggcggcagatgagagagttttagtaagggat |
28386356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 302
Target Start/End: Original strand, 12541369 - 12541668
Alignment:
| Q |
3 |
gtatgaagtaaattgtttgttcgaagggaatgaaagatcgagacagcaaagagagacgatccattaaacgttagattcgggatttgaagcttgtgggcca |
102 |
Q |
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|||||||| ||||||||| ||| |||||| | | || ||||||||||| ||||| |||||||| || || | ||| || | ||| ||||| | |||| |
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| T |
12541369 |
gtatgaagcaaattgttttttctaagggattccatgagggagacagcaaaaagagaggatccattgaatgtgaaattgggtacttgtagcttacgagcca |
12541468 |
T |
|
| Q |
103 |
agtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggttcattgaggagcattgcgccatt |
202 |
Q |
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| T |
12541469 |
agtcattaccccatgagtaagaagagtcggcaatgatacaatcaggtggattattcacaacaaaatcatcaatgggtccatggaggagcattgcaccatt |
12541568 |
T |
|
| Q |
203 |
atggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtgaagg |
302 |
Q |
| |
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|| || ||||||| ||| || |||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||| || || ||||||||| |
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| T |
12541569 |
gtgaattttccaagaggtaatggggtcagtggtggaggacatagattcaatgcctttagggaggtcgacttgttcggaggggaagtcgacagtgtgaagg |
12541668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 308
Target Start/End: Complemental strand, 3416953 - 3416726
Alignment:
| Q |
81 |
gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggtt |
180 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||||| | |||| || || | || |||||||| ||||||| || | || ||||||| ||| ||| |
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| T |
3416953 |
gggatttgaagcttctgggccaagtcattaacccatgggtatgcagagtcggagatgatacaatctggtggatcgtttttaatgaaatcctcaatgggtc |
3416854 |
T |
|
| Q |
181 |
cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgata |
280 |
Q |
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|| |||||||||||||||||| | ||||||||||||||||| |||| |||||||||| ||||| |||| ||||| ||||||||| | ||||||| | |
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| T |
3416853 |
gatggaggagcattgcgccattgttgatcttccaagtggtgacgaggtcggtggtggaggatatagattcaatgccttcagggaggtccatttgttgaaa |
3416754 |
T |
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| Q |
281 |
ggggaattcaacggtgtgaaggcggagg |
308 |
Q |
| |
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||| || || |||||||||||||||||| |
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| T |
3416753 |
gggaaagtcgacggtgtgaaggcggagg |
3416726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 308
Target Start/End: Original strand, 13440962 - 13441189
Alignment:
| Q |
81 |
gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggtt |
180 |
Q |
| |
|
||||| |||||||| || ||||||||||||||||||| | ||||||| || | || |||||||| ||||||| ||||| | ||||||| ||| | | |
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| T |
13440962 |
gggatctgaagcttatgcgccaagtcattagcccatgggtatgcggagtcggagatgatacaatctggtggatctttctccatgaaatcctcaatggatc |
13441061 |
T |
|
| Q |
181 |
cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgata |
280 |
Q |
| |
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||| |||||||||||||||| ||||||||||||| ||| |||| |||||||||||| | |||||| |||| ||||| |||||||||||||||||| | |
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| T |
13441062 |
catggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtggtggaagacatagattcaatgccttcagggaggtcgacttgttggga |
13441161 |
T |
|
| Q |
281 |
ggggaattcaacggtgtgaaggcggagg |
308 |
Q |
| |
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||| || || |||||||| | ||||||| |
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| T |
13441162 |
gggaaagtcgacggtgtggaagcggagg |
13441189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 81 - 301
Target Start/End: Original strand, 13449125 - 13449345
Alignment:
| Q |
81 |
gggatttgaagcttgtgggccaagtcattagcccatgagaatgcggaatcagcaataatacaatccggtggattcttctcaacgaaatccccaaccggtt |
180 |
Q |
| |
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||||| |||| ||| | ||||||||||||| |||||| | | | ||| || | || |||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
13449125 |
gggatctgaaacttatcggccaagtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattctcaatgaaatccccaataggtt |
13449224 |
T |
|
| Q |
181 |
cattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgata |
280 |
Q |
| |
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| || |||||||| |||||| |||||||||||||||||||| | ||||| || || || | |||||| |||| |||| ||||||| |||||||||| | |
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| T |
13449225 |
ctttaaggagcatcgcgccagtatggatcttccaagtggtggtggggtccgtagttgaagacatagattcaataccttcagggaggccgacttgttggga |
13449324 |
T |
|
| Q |
281 |
ggggaattcaacggtgtgaag |
301 |
Q |
| |
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|||||| |||||||||||||| |
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| T |
13449325 |
ggggaagtcaacggtgtgaag |
13449345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 13462229 - 13462365
Alignment:
| Q |
164 |
gaaatccccaaccggttcattgaggagcattgcgccattatggatcttccaagtggtgatagggtcagtggtggaggtcatagactcaacgcctttaggg |
263 |
Q |
| |
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||||||| ||| ||| ||| ||||||||||||||||| |||||||||||||| ||| | | ||| |||||||| | |||||| |||| ||| | ||| |
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| T |
13462229 |
gaaatcctcaatgggtccatggaggagcattgcgccatgatggatcttccaagatgtggtggagtcggtggtggaagacatagattcaatgccatcagga |
13462328 |
T |
|
| Q |
264 |
aggtcgacttgttgataggggaattcaacggtgtgaa |
300 |
Q |
| |
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||| | |||||||| |||||||||| | |||||||| |
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| T |
13462329 |
aggccaacttgttgggaggggaattcgatggtgtgaa |
13462365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 12640761 - 12640677
Alignment:
| Q |
224 |
agggtcagtggtggaggtcatagactcaacgcctttagggaggtcgacttgttgataggggaattcaacggtgtgaaggcggagg |
308 |
Q |
| |
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||||| ||||||||||| || || |||||||| | || || ||||||||||| ||||||| || |||||||||||||||||| |
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|
| T |
12640761 |
agggttagtggtggaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggagg |
12640677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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