View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12937_low_9 (Length: 244)
Name: NF12937_low_9
Description: NF12937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12937_low_9 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2131 - 2357
Alignment:
| Q |
1 |
ttgaattcaatttgtagctgattcttccctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgcagttcttggataatttag |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2131 |
ttgaattcaatttgtagctgattcttcgctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgctgttcttggataatttag |
2230 |
T |
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| Q |
101 |
cattctttgtttgtagtctagtcctgattcccatggatatagtgctgaaaatgatgatggtcctagtaacggtgtttcaattattgctcttgtatccgat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231 |
cattctttgtttgtagtccagtcctgattcccatggatatagtgctgaaaatgatgatggtcctagtaacggtgtttcaattattgctcttgtatccgat |
2330 |
T |
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| Q |
201 |
attgaatcatcatttgatgatgagggt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2331 |
attgaatcatcatttgatgatgagggt |
2357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31333793 - 31333567
Alignment:
| Q |
1 |
ttgaattcaatttgtagctgattcttccctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgcagttcttggataatttag |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31333793 |
ttgaattcaatttgtagctgattcttcgctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgctgttcttggataatttag |
31333694 |
T |
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| Q |
101 |
cattctttgtttgtagtctagtcctgattcccatggatatagtgctgaaaatgatgatggtcctagtaacggtgtttcaattattgctcttgtatccgat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31333693 |
cattctttgtttgtagtccagtcctgattcccatggatatagtgctgaaaatgatgatggtcctagtaacggtgtttcaattattgctcttgtatccgat |
31333594 |
T |
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| Q |
201 |
attgaatcatcatttgatgatgagggt |
227 |
Q |
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| T |
31333593 |
attgaatcatcatttgatgatgagggt |
31333567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31321540 - 31321314
Alignment:
| Q |
1 |
ttgaattcaatttgtagctgattcttccctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgcagttcttggataatttag |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || || ||||| ||||||||||| ||||| |
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| T |
31321540 |
ttgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgctttgtctcttattattgtgattaagtgtgctgttcttggatattttag |
31321441 |
T |
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| Q |
101 |
cattctttgtttgtagtctagtcctgattcccatggatatagtgctgaaaatgatgatggtcctagtaacggtgtttcaattattgctcttgtatccgat |
200 |
Q |
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||||||||||||| |||| |||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321440 |
cattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatgatgatggtcctagtaacggtgtttcaattattgctcttgtatccgat |
31321341 |
T |
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| Q |
201 |
attgaatcatcatttgatgatgagggt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31321340 |
attgaatcatcatttgatgatgagggt |
31321314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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