View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12938_high_3 (Length: 263)
Name: NF12938_high_3
Description: NF12938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12938_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 24876478 - 24876720
Alignment:
| Q |
1 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24876478 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaa-atgtctaagaagaaagatgaac |
24876576 |
T |
|
| Q |
101 |
ttctaattaataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24876577 |
ttctaattaataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtatatgctaaaaa |
24876676 |
T |
|
| Q |
201 |
ttgagtgaacaatacttcaaacaattataaacctctcatgtact |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24876677 |
ttgagtgaacaatacttcaaacaattataaacctctcatgtact |
24876720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 24880980 - 24881206
Alignment:
| Q |
1 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24880980 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaa-atgtctaagaagaaagatgaac |
24881078 |
T |
|
| Q |
101 |
ttctaattaataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24881079 |
ttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattaca-----------------atagtaatgtacatgctaaaaa |
24881161 |
T |
|
| Q |
201 |
ttgagtgaacaatacttcaaacaattataaacctctcatgtactt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24881162 |
ttgagtgaacaatacttcaaacaattataaacctctcatatactt |
24881206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 24886315 - 24886392
Alignment:
| Q |
1 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaa |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24886315 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaa |
24886392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14087717 - 14087960
Alignment:
| Q |
1 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14087717 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaac |
14087816 |
T |
|
| Q |
101 |
ttctaattaataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14087817 |
ttctaattaataaattcactttgttacactctacttgttttattgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaa |
14087916 |
T |
|
| Q |
201 |
ttgagtgaacaatacttcaaacaattataaacctctcatgtact |
244 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14087917 |
ttgagtgaacaataattcaaacaattataaacctctcatgtact |
14087960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14092249 - 14092492
Alignment:
| Q |
1 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14092249 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaataaatttgtatgaaaaaatgtctaaaaagaaagatgaac |
14092348 |
T |
|
| Q |
101 |
ttctaattaataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14092349 |
ttctaataaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaacattttataataatgtacatgctaaaaa |
14092448 |
T |
|
| Q |
201 |
ttgagtgaacaatacttcaaacaattataaacctctcatgtact |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14092449 |
ttgagtgaacaatacttcaaacaattataaacctctcatgtact |
14092492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 33681915 - 33681678
Alignment:
| Q |
8 |
taataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681915 |
taataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaat |
33681816 |
T |
|
| Q |
108 |
taataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgcta-aaaattgagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33681815 |
taataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaaattgagt |
33681716 |
T |
|
| Q |
207 |
gaacaatacttcaaacaattataaacctctcatgtact |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33681715 |
gaacaatacttcaaacaattataaacctctcatgtact |
33681678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 244
Target Start/End: Complemental strand, 33698972 - 33698735
Alignment:
| Q |
8 |
taataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698972 |
taataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaat |
33698873 |
T |
|
| Q |
108 |
taataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgcta-aaaattgagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33698872 |
taataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaaattgagt |
33698773 |
T |
|
| Q |
207 |
gaacaatacttcaaacaattataaacctctcatgtact |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698772 |
gaacaatacttcaaacaattataaacctctcatgtact |
33698735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 46454237 - 46453994
Alignment:
| Q |
1 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46454237 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagttagaacaataaatttgtatgaaaaaatgtctaaaaagaaagatgaac |
46454138 |
T |
|
| Q |
101 |
ttctaattaataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46454137 |
ttctaataaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactcctaaacattttataataatgtacatgctaaaaa |
46454038 |
T |
|
| Q |
201 |
ttgagtgaacaatacttcaaacaattataaacctctcatgtact |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46454037 |
ttgagtgaacaatacttcaaacaattataaacctctcatgtact |
46453994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 46461637 - 46461395
Alignment:
| Q |
1 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
46461637 |
cttctaataataatatgaactatgcactcactaaagttgaacatgaatgtagctagaacaataaatttgtatgaaaaa-tgtgtaagaagaaagatgaac |
46461539 |
T |
|
| Q |
101 |
ttctaattaataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
46461538 |
ttctaattaataaattcactttgttacactctacttgttttgttgtgatatctaaattacaaaactccttaacattttatagtaacctacatgctaaaaa |
46461439 |
T |
|
| Q |
201 |
ttgagtgaacaatacttcaaacaattataaacctctcatgtact |
244 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46461438 |
ttgagtgaacaatacctcaaacaattataaacctctcatgtact |
46461395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9955437 - 9955195
Alignment:
| Q |
1 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
9955437 |
cttctaataataatatgaactatgtactcattaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaa-tgtctaagaagaaaggtgaac |
9955339 |
T |
|
| Q |
101 |
ttctaattaataaattcactttgttacactctatttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9955338 |
ttctaattaataaattcactttgttacactctacttgtttttttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaa |
9955239 |
T |
|
| Q |
201 |
ttgagtgaacaatacttcaaacaattataaacctctcatgtact |
244 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9955238 |
ttgagtgaacaatatttcaaacaattataaacctctcatgtact |
9955195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 9950416 - 9950206
Alignment:
| Q |
34 |
aagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaattaataaattcactttgttacactcta |
133 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9950416 |
aagttgaacacgaatgtagttagaacaataaatttgtatgaaaaa-tgtctaagaagaaagatgaacttctaattaataaattcactatgttacactcta |
9950318 |
T |
|
| Q |
134 |
tttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgcta-aaaattgagtgaacaatacttcaaacaattataaac |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9950317 |
cttgttttgttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgctaaaaaattgagtgaacaatacttcaaacaattataaac |
9950218 |
T |
|
| Q |
233 |
ctctcatgtact |
244 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9950217 |
ctctcatgtact |
9950206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 32213510 - 32213756
Alignment:
| Q |
1 |
cttctaataataatatgaactatgcactcactaaagttgaacacgaatg----tagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagat |
96 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||| |||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
32213510 |
cttctaataatgatatgaaatatgcacttactaaagctgaacacgaaataacttagctagaacaataaacttgtatgaaaaa-tgtctaagaagaaagat |
32213608 |
T |
|
| Q |
97 |
gaacttctaattaataaattcactttgttacactctatttgtttt-gttgtgatatctaaattacaaaactcctaaacattttatagtaatgtacatgct |
195 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||||||||| |||||| || |
|
|
| T |
32213609 |
aaacttctaattaataaactcactt-gttacactctatttgtttttgttgtgatatctaaaatacaaaacttctgaacattttatagtaacgtacattct |
32213707 |
T |
|
| Q |
196 |
aaaaattgagtgaacaatacttcaaacaattataaacctctcatgtact |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
32213708 |
aaaaattgagtgaacaatacttcaaacaattataaatctctgatgtact |
32213756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 32213385 - 32213273
Alignment:
| Q |
12 |
aatatgaactatgcactcactaaagttgaacacgaatg----tagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaat |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
32213385 |
aatatgaaatatgcactcactaaagttgaacacgaaataacatagctagaacaataaacttgtatgaaaaa-tgtctaagaagaaaaatgaacttctaat |
32213287 |
T |
|
| Q |
108 |
taataaattcactt |
121 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
32213286 |
taataaactcactt |
32213273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 32213256 - 32213184
Alignment:
| Q |
171 |
aacattttatagtaatgtacatgctaaaaattgagtgaacaatacttcaaacaattataaacctctcatgtac |
243 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||| |
|
|
| T |
32213256 |
aacattttatagtaacgtacatcctaaaaattgagtgaacaatacttcaaacaattataatcctatgatgtac |
32213184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 9360905 - 9361021
Alignment:
| Q |
7 |
ataataatatgaactatgcactcactaaagttgaacacgaatgtagctagaacaataaatttgtatgaaaaaatgtctaagaagaaagatgaacttctaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9360905 |
ataataatatgaactatgcactcactaaagttgaacatgaatgtagctagaacaataaatttgtatg-aaaaatgtctaagaagaaagatgaacttctaa |
9361003 |
T |
|
| Q |
107 |
ttaataaattcactttgt |
124 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9361004 |
ttaataaattcactttgt |
9361021 |
T |
|
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