View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12938_low_1 (Length: 482)
Name: NF12938_low_1
Description: NF12938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12938_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 5821908 - 5821611
Alignment:
| Q |
13 |
atactgaatagtgattttctaatttttcgatcttcagcaaagttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821908 |
atactgaatagtgattttctaatttttcgatcttcagcgaagttattggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataa |
5821809 |
T |
|
| Q |
113 |
ctgttggacattttttattggatgaactttcatgcttcgaatattttacaaacatcttttcccacacgagagttttgtttgataatcaaggttcagattc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821808 |
ctgttggacattttttattggatgaactttcatgcttcgaatattttacaaacatctttccccacacgagagttttgtttgataatcaaggttcagattc |
5821709 |
T |
|
| Q |
213 |
aggtgtacagaagaatcaagcctacattgaatgagtcatgaaacatgaatgcctattagagaagaaagggtggtggtaaatacatcatataattgcac |
310 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
5821708 |
aggtgtacagaagaaccaagcctacattgaatgattcatgaaacatgaatgcctattagagaagaaggggtggtggtaaatgcatcatatagttgcac |
5821611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 350 - 464
Target Start/End: Complemental strand, 5821570 - 5821452
Alignment:
| Q |
350 |
cgttacggtgatgagttaatgcatcattatactttgaatgtggatgaaactttgtgttgatggaag----agtgaggtttcatttttatttgaagtaact |
445 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
5821570 |
cgttatggtaatgagttaatgcatcattatactttgaatgtggatgaaactttgtgttggtggaagagtaagtgaggttttatttttatttgaagtaact |
5821471 |
T |
|
| Q |
446 |
cgctactaacattatgtta |
464 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
5821470 |
tgctactagcattatgtta |
5821452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 4904421 - 4904532
Alignment:
| Q |
13 |
atactgaatagtgattttctaatttttcgatcttcagcaaagttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataa |
112 |
Q |
| |
|
|||||| ||||||||| || || ||||||| |||| |||||||| || |||||||| |||| |||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
4904421 |
atactgtatagtgattgtccaagttttcgagtttcatcaaagttattgcttgatttcttaagatcttcaagagaaaattgatggcatagttcttttatag |
4904520 |
T |
|
| Q |
113 |
ctgttggacatt |
124 |
Q |
| |
|
||||||||||| |
|
|
| T |
4904521 |
atgttggacatt |
4904532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 4908382 - 4908495
Alignment:
| Q |
50 |
caaagttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacattttttattggatgaactttcatgctt |
149 |
Q |
| |
|
|||||||| | || |||||| |||| || || |||||||||||||| ||| ||||||||||||| |||||| ||| ||| ||||| | ||||| | |||| |
|
|
| T |
4908382 |
caaagttattagtagatttcttaagatcatccagagaaaattgatggcatcgctcttctataacagttggatattgtttcttggaaggacttttacgctt |
4908481 |
T |
|
| Q |
150 |
cgaatattttacaa |
163 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4908482 |
tgaatattttacaa |
4908495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 4927851 - 4927737
Alignment:
| Q |
27 |
ttttctaatttttcgatcttcagcaaagttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacatttt |
126 |
Q |
| |
|
||||| ||||||||||| |||| |||||||| |||| | |||| |||| || || |||||||| | ||| |||||||| | ||||| ||||| ||||| | |
|
|
| T |
4927851 |
ttttccaatttttcgattttcatcaaagttattggtagctttcttaagctcgtccagagaaaactcatggcatagctcatttataaatgttgaacattgt |
4927752 |
T |
|
| Q |
127 |
ttattggatgaactt |
141 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
4927751 |
ttcttggacgaactt |
4927737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 4921603 - 4921495
Alignment:
| Q |
33 |
aatttttcgatcttcagcaaagttagtggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctataactgttggacattttttattg |
132 |
Q |
| |
|
||||||||||| || | |||||||| |||| | |||| |||| || || |||||||| | ||| ||||| |||| ||||| ||||| ||||| ||| ||| |
|
|
| T |
4921603 |
aatttttcgatttttatcaaagttattggtagctttcttaagatcgtccagagaaaactcatggcatagttcttttataaatgttgaacattgtttcttg |
4921504 |
T |
|
| Q |
133 |
gatgaactt |
141 |
Q |
| |
|
|| |||||| |
|
|
| T |
4921503 |
gacgaactt |
4921495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University