View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12938_low_4 (Length: 342)
Name: NF12938_low_4
Description: NF12938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12938_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 45565730 - 45566038
Alignment:
| Q |
16 |
acatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttgcgccacaaccaaagtcctatcatctttcttcaagtt |
115 |
Q |
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| T |
45565730 |
acatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgttgcgccacaaccaaagtcctatcatctttcttcaagtt |
45565829 |
T |
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| Q |
116 |
tgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtgtcaccatccttaagccaaatcacctttgctatttgtttc |
215 |
Q |
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| T |
45565830 |
tgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtatcaccatccttaagccaaatcacctttgctatttgtttc |
45565929 |
T |
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| Q |
216 |
caaaatgcttctgcttgtgccaataatcctcccattcaaatatgtacctccttagagcgcccaatttgggaagcttgcacgctgcccctaaatctatcta |
315 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
45565930 |
caaaatgcttctgcttgtgccaataatcctctcattcaaatatgtacctccttagagcgcgcaatttgggaagcttgcacgctgcccctaaatctctcta |
45566029 |
T |
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| Q |
316 |
actcatccc |
324 |
Q |
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||||||||| |
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| T |
45566030 |
actcatccc |
45566038 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 8179388 - 8179449
Alignment:
| Q |
177 |
tcaccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaa |
238 |
Q |
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||||||||||| |||||||||||||| ||| |||| |||||||| |||||| |||||||||| |
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| T |
8179388 |
tcaccatccttcagccaaatcaccttagctctttgcttccaaaacgcttcttcttgtgccaa |
8179449 |
T |
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