View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12939_high_1 (Length: 551)

Name: NF12939_high_1
Description: NF12939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12939_high_1
NF12939_high_1
[»] chr1 (1 HSPs)
chr1 (14-533)||(36375394-36375913)
[»] chr3 (4 HSPs)
chr3 (23-527)||(32249557-32250067)
chr3 (252-493)||(32190113-32190354)
chr3 (106-529)||(32192370-32192788)
chr3 (15-448)||(32184572-32185005)
[»] chr7 (2 HSPs)
chr7 (15-528)||(8844096-8844612)
chr7 (31-528)||(8823272-8823772)
[»] chr5 (2 HSPs)
chr5 (54-137)||(35959457-35959540)
chr5 (316-354)||(35959222-35959260)


Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 14 - 533
Target Start/End: Original strand, 36375394 - 36375913
Alignment:
Q  14 catcaaagttgaggaagtgcttaatggatctaccagcagcattgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36375394 catcaaagttgaggaagtgcttaatggatctaccagcagcattgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacac 36375493  T
Q  114 tctctgtttagccagaccaaaatttattcacgaagttctggaagagttagattctaagtacagaagaggcaaactagaggaggaagtgcctcatttacta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36375494 tctctgtttagccagaccaaaatttattcacgaagttctggaagagttagattctaagtacagaagaggcaaactagaggaggaagtgcctcatttacta 36375593  T
Q  214 gaggcacgcgcgagaaaattcttcttggagaacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36375594 gaggcacgcgcgagaaaattcttcttggagaacattgaaaagaaaattaactcaaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaa 36375693  T
Q  314 tcacaaatggttttatcgatgtttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaaca 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36375694 tcacaaatggttttatcgatgtttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaaca 36375793  T
Q  414 acacgagattgtgcagaaactgcaaaagaaaatggtgggctgtaccggttactctcttgaggttgagcttttgataacactcgggttaatacatccatgg 513  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36375794 acacgagattgtgcagaaactgcaaaagaaaatggtgggcagtaccggttactctcttgaggttgagcttttgataacactcgggtcaatacatccatgg 36375893  T
Q  514 ttgatcaaaacagcagaatc 533  Q
    ||||||||||||||||||||    
T  36375894 ttgatcaaaacagcagaatc 36375913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 5e-85; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 23 - 527
Target Start/End: Complemental strand, 32250067 - 32249557
Alignment:
Q  23 tgaggaagtgcttaatggatctaccagcagcattgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacactctctgttt 122  Q
    ||||||| || |||||| | || ||| ||| ||||||||| || || |||||||| |||||||| ||||||||  | ||||| |||||||| || |||||    
T  32250067 tgaggaaatgtttaatgaaacttccaacagaattgagaatattgctctctggcacattgtttcagaacaatttctgtgaatatttcaacacactttgttt 32249968  T
Q  123 agccagaccaaaatttattcacgaagttctggaagagttagattctaagtacagaaga------ggcaaactagaggaggaagtgcctcatttactagag 216  Q
    ||| ||||| |||||| |||| ||||||||  |||||||||||||||| ||| ||||       || ||| ||| | || |||  | |||||| || |||    
T  32249967 agctagaccgaaatttgttcatgaagttctacaagagttagattctaaataccgaaggaaaggtggaaaaatagcgaagaaagaacgtcatttgcttgag 32249868  T
Q  217 gcacgcgcgagaaaattcttcttggagaacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatca 316  Q
    || ||||||||||||||||| ||| | |||||||||||||||||||||||  ||||||||| ||| || ||| ||||| || ||||||| ||||||||||    
T  32249867 gcgcgcgcgagaaaattctttttgaacaacattgaaaagaaaattaactcggatattgatgaggagaagatgcagggtctatatgtgctgcgaaaaatca 32249768  T
Q  317 caaatggttttatcgatgtttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaacaaca 416  Q
    |     ||||||| ||||| || ||| |||||| ||||||||| |||||||| ||||| ||||| |||||||||||| ||||| | ||||| ||||| ||    
T  32249767 cttccagttttattgatgtgtacgacagtggaaattcttctgagactcttcctggtttacaaatatatacattgctcatgaatacgtccgacgaacagca 32249668  T
Q  417 cgagattgtgcagaaactgcaaaagaaaatggtgggctgtaccggttactctcttgaggttgagcttttgataacactcgggttaatacatccatggttg 516  Q
     |||||||| |||||||| || ||||||||||  |   ||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  32249667 tgagattgtacagaaacttcagaagaaaatggccgagagtaccagttaccctcttgaggttgagcttttgataacactcggatcaatacatccatggttg 32249568  T
Q  517 atcaaaacagc 527  Q
    |||||||||||    
T  32249567 atcaaaacagc 32249557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 252 - 493
Target Start/End: Complemental strand, 32190354 - 32190113
Alignment:
Q  252 aaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatcacaaatggttttatcgatgtttatgacggtggaagt 351  Q
    ||||||| |||||||  ||||||||| ||||||||||||||||||| ||||||| ||||||||||| | | |||| ||||||||||||||| |||||| |    
T  32190354 aaagaaatttaactcagatattgatgaggaaaaaatgaagggtatatatgtgctgcgaaaaatcactagtcgtttcatcgatgtttatgacagtggaaat 32190255  T
Q  352 tcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaacaacacgagattgtgcagaaactgcaaaagaaaatggtgg 451  Q
    ||||||||||||||||| ||||| |||||||| ||| ||||| ||||| |||| ||||||||||||||  || | |  |||||||||||||||||||       
T  32190254 tcttctgatactcttccaggtttacaaatctaaacactgctcatgaatacatctgatgaacaacacgaagttttacgtaaactgcaaaagaaaatggcta 32190155  T
Q  452 gctgtaccggttactctcttgaggttgagcttttgataacac 493  Q
      || || |||||  |||||||||||| ||||||||||||||    
T  32190154 agtgcactggttatcctcttgaggttgtgcttttgataacac 32190113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 106 - 529
Target Start/End: Original strand, 32192370 - 32192788
Alignment:
Q  106 ttcaacactctctgtttagccagaccaaaatttattcacgaagttctggaagagttagattctaagtacagaagaggcaaactagaggaggaagtgcctc 205  Q
    |||||||| || ||||||||  |||| |||||| |||| ||||||||  |||||||| ||||||| ||||| ||||| ||| ||||| || | | ||  |    
T  32192370 ttcaacacactttgtttagcttgaccgaaatttgttcatgaagttctacaagagttaaattctaattacaggagaggaaaaatagagaagaatgcgcagc 32192469  T
Q  206 atttactagaggcacgcgcgagaaaattcttcttggagaacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgct 305  Q
    |||| || |||   || ||||| |||||||||||||| || |||| ||||||||| |||||  ||||||||| ||||||||||| ||   |  |||| ||    
T  32192470 attttctcgagatgcgggcgaggaaattcttcttggacaatattgcaaagaaaataaactcagatattgatgaggaaaaaatgaggg---tccatgtcct 32192566  T
Q  306 tcgaaaaatcacaaatggttttatcgatgtttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatcc 405  Q
      |||| |||| |   ||||| || ||| |||||||| |||||| ||||| |||||||||||| | ||| |||||||| | | ||||| ||||| ||||     
T  32192567 gtgaaatatcatagc-ggtttcattgatctttatgacagtggaaattcttatgatactcttccag-tttacaaatctaaatactgctcatgaatacatct 32192664  T
Q  406 gatgaacaacacgagattgtgcagaaactgcaaaagaaaatggtgggctgtaccggttactctcttgaggttgagcttttgataacactcgggttaatac 505  Q
    | ||||||||||| |||| | || ||| |||| ||||||||||     |||||  ||||  |||||||||||||  ||||||||||||||||||  ||||    
T  32192665 gctgaacaacacgtgattttacataaaatgcagaagaaaatggctaagtgtacaagttatactcttgaggttgaaattttgataacactcgggtcgatac 32192764  T
Q  506 atccatggttgatcaaaacagcag 529  Q
    |||||| |||||||||||||||||    
T  32192765 atccatagttgatcaaaacagcag 32192788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 448
Target Start/End: Original strand, 32184572 - 32185005
Alignment:
Q  15 atcaaagttgaggaagtgcttaatggatctaccagcagcattgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacact 114  Q
    ||||| ||||||||| |  |||||| | || ||| ||| ||||||||| |||||||||||||| |||||| | ||||||||  | ||||| ||| ||||     
T  32184572 atcaaggttgaggaaatatttaatgaaacttccaacagaattgagaatattactttctggcacattgttttagaacaatttctgtgaatatttccacaca 32184671  T
Q  115 ctctgtttagccagaccaaaatttattcacgaagttctggaagagttagattctaagtacagaag---aggcaaactagaggaggaagtgcctcatttac 211  Q
    || |||||||  ||||| |||| | || | ||||||||  |||||||||||||||| |||| |||   |||  |  ||||| |  ||   |  ||||| |    
T  32184672 ctttgtttaggtagaccgaaatatgttgatgaagttctacaagagttagattctaaatacataaggaaaggatacatagagaataaatcacaacattttc 32184771  T
Q  212 tagaggcacgcgcgagaaaattcttcttggagaacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaa 311  Q
    |  ||||||  ||||| |||||||||||||| ||||||| ||||||||||||| | |||| | ||| || ||||||| ||||| || |||||||  | ||    
T  32184772 tcaaggcaccagcgaggaaattcttcttggacaacattgcaaagaaaattaacgcaaata-tcatgagggaaaaatgcagggtgtatatgtgctgtg-aa 32184869  T
Q  312 aatcacaaatggttttatcgatgtttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaa 411  Q
    |||||  | |||||| ||||||||||||||   ||||| || |||||||||||||   || ||  ||||||||| | ||||| | ||||  |||||||||    
T  32184870 aatcatgagtggtttcatcgatgtttatgaaaatggaaattattctgatactcttttaggattagaaatctataaagtgctcataaatgtgtccgatgaa 32184969  T
Q  412 caacacgagattgtgcagaaactgcaaaagaaaatgg 448  Q
    |||||  ||||| | ||||||||||| ||||||||||    
T  32184970 caacataagatt-ttcagaaactgcagaagaaaatgg 32185005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 528
Target Start/End: Complemental strand, 8844612 - 8844096
Alignment:
Q  15 atcaaagttgaggaagtgcttaatggatctaccagcagcattgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacact 114  Q
    ||||| ||||||||| ||||||||||| || ||| ||| |||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||| ||     
T  8844612 atcaaggttgaggaaatgcttaatggaacttccaacagaattgaggatattactttctggcactttgtttcagaacaatttcggtgaatatttcaataca 8844513  T
Q  115 ctctgtttagccagaccaaaatttattcacgaagttctggaagagttagattctaagtac---agaagaggcaaactagaggaggaagtgcctcatttac 211  Q
    || |||||||| |||||||||||| |||||||||| ||   ||||||||||||||| |||   || ||||| ||   |||| || ||| ||  ||||| |    
T  8844512 ctgtgtttagcaagaccaaaatttgttcacgaagtgctacgagagttagattctaaatacttaaggagaggtaacagagagaagaaagcgcagcatttgc 8844413  T
Q  212 tagaggcacgcgcgagaaaattcttcttggagaacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaa 311  Q
    | ||||| || ||||| |||||||||||||| |||||||  | ||||||||||||  |||  ||||  ||||||||| ||||| || ||||||| |||||    
T  8844412 ttgaggcgcgggcgaggaaattcttcttggacaacattgctaggaaaattaactcagataacgatgaagaaaaaatgcagggtctacatgtgctgcgaaa 8844313  T
Q  312 aatcacaaatggttttatcgatgtttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaa 411  Q
     |||||||   |||| ||||| ||||||||  |||||| ||| |||||||| ||||| ||||| ||||| |||||| ||||| ||||| ||| |||||||    
T  8844312 gatcacaagcagtttcatcgacgtttatgaaagtggaaattcctctgatacacttcctggtttacaaatatatacactgctcatgaatacatacgatgaa 8844213  T
Q  412 caacacgagattgtgcagaaactgcaaaagaaaatggtgggctgtaccggttactctcttgaggttgagcttttgataacactcgggttaatacatccat 511  Q
    || |  |||||| | ||||||||||| ||||||||||  |  ||||| |||||| |||||||||| ||||||||||||||||| || |  ||||||||||    
T  8844212 cagcttgagattttacagaaactgcagaagaaaatggctgagtgtactggttaccctcttgaggtagagcttttgataacacttggatcgatacatccat 8844113  T
Q  512 ggttgatcaaaacagca 528  Q
    |||||||||||||||||    
T  8844112 ggttgatcaaaacagca 8844096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 31 - 528
Target Start/End: Original strand, 8823272 - 8823772
Alignment:
Q  31 tgcttaatggatctaccagcagcattgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacactctctgtttagccagac 130  Q
    ||||||||||| || |||  || ||| ||||  ||||||||||||||| | ||||| ||||||||| | ||||| |||||||| |  |||||||| ||||    
T  8823272 tgcttaatggaacttccaatagaattaagaaaattactttctggcactctttttcagaacaatttttgtgaatatttcaacacaccttgtttagcaagac 8823371  T
Q  131 caaaatttattcacgaagttctggaagagttagattctaagtac---agaagaggcaaactagaggaggaagtgcctcatttactagaggcacgcgcgag 227  Q
    |||||||| |||||||||| ||   ||||||||||| ||| |||   || |||||  |   |||| |  ||| ||  ||||| || ||||| ||  | ||    
T  8823372 caaaatttgttcacgaagtgctacgagagttagattttaaatacttgaggagaggttatggagagaataaagcgcaacattttcttgaggcgcgaccaag 8823471  T
Q  228 aaaattcttcttggagaacattgaaaagaaaattaactctaatattgatgcggaaaaaatgaagggtatagatgtgcttcgaaaaatcacaaatggtttt 327  Q
     | ||||||| |||| |||||||  | ||||||||||||  | | ||||| |||||||||| ||||| ||  |||||| | ||| ||||| |   ||||     
T  8823472 gagattcttcatggaaaacattgctaggaaaattaactcacacaatgatgaggaaaaaatgcagggtctacctgtgctgcaaaagatcacgagcagtttc 8823571  T
Q  328 atcgatgtttatgacggtggaagttcttctgatactcttcccggtttgcaaatctatacattgctcgtgaatgcatccgatgaacaacacgagattgtgc 427  Q
    ||||| ||||||||  |||||| |||||||||||| | ||| ||||| ||||| |||||| || ||  |||| | |  ||||||||||| ||| || |      
T  8823572 atcgacgtttatgaaagtggaaattcttctgatacacctcctggtttacaaatttatacactggtcaggaatacgtatgatgaacaacatgaggttatat 8823671  T
Q  428 agaaactgcaaaagaaaatggtgggctgtaccggttactctcttgaggttgagcttttgataacactcgggttaatacatccatggttgatcaaaacagc 527  Q
    | |||||||||||||||||||  |  |||||| |||||||||||||||| ||| |||||||||||||  | |  |||||||||||||||||||||| |||    
T  8823672 ataaactgcaaaagaaaatggctgagtgtaccagttactctcttgaggtagagattttgataacacttagatccatacatccatggttgatcaaaatagc 8823771  T
Q  528 a 528  Q
    |    
T  8823772 a 8823772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 35959540 - 35959457
Alignment:
Q  54 attgagaattttactttctggcactttgtttcaaaacaattttggggaatacttcaacactctctgtttagccagaccaaaatt 137  Q
    ||||||||| || ||||| || |||||||||||||| |||||  | ||||||||||||||||| || || || ||||| |||||    
T  35959540 attgagaatattgctttccggtactttgtttcaaaataatttctgcgaatacttcaacactctatgcttggcaagaccgaaatt 35959457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 35959260 - 35959222
Alignment:
Q  316 acaaatggttttatcgatgtttatgacggtggaagttct 354  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  35959260 acaaatggttttatcgatgtttatgaagctggaagttct 35959222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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