View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12939_low_3 (Length: 396)

Name: NF12939_low_3
Description: NF12939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12939_low_3
NF12939_low_3
[»] chr7 (8 HSPs)
chr7 (110-237)||(27266578-27266705)
chr7 (110-237)||(27255148-27255278)
chr7 (21-99)||(17507475-17507552)
chr7 (21-99)||(17545662-17545739)
chr7 (123-234)||(27244683-27244791)
chr7 (328-385)||(27251301-27251358)
chr7 (299-369)||(27282631-27282698)
chr7 (27-99)||(15644696-15644767)
[»] chr8 (5 HSPs)
chr8 (21-92)||(136405-136475)
chr8 (21-99)||(18309501-18309577)
chr8 (21-92)||(25890549-25890619)
chr8 (38-99)||(37322038-37322099)
chr8 (63-99)||(8565290-8565326)
[»] chr3 (2 HSPs)
chr3 (19-99)||(26535522-26535601)
chr3 (20-99)||(14853389-14853468)
[»] chr1 (4 HSPs)
chr1 (118-231)||(14888626-14888736)
chr1 (21-99)||(39584498-39584575)
chr1 (123-231)||(14883365-14883469)
chr1 (63-99)||(38225648-38225684)
[»] chr2 (1 HSPs)
chr2 (21-99)||(13059404-13059481)
[»] scaffold0351 (1 HSPs)
scaffold0351 (63-99)||(13625-13661)
[»] chr4 (1 HSPs)
chr4 (63-96)||(19163798-19163831)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 27266705 - 27266578
Alignment:
Q  110 tatgtcaa-aaggatattgaaattaaaagcaatatctagcaaagaaagtgatgttgaatttgctattaagttgggttcgattgaaatagttactagctct 208  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27266705 tatgtcaataaggttattgaaattaaaagcaatatctagcaaagaa-gtgatgttgaatttgctattaagttgggttcgattgaaatagttactagctat 27266607  T
Q  209 agctaaagccaattattgcaaacgttcac 237  Q
    ||||||||||| |||||||||||||||||    
T  27266606 agctaaagccatttattgcaaacgttcac 27266578  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 27255278 - 27255148
Alignment:
Q  110 tatgtcaa-aaggatattgaaattaaaagcaatatctagcaaagaaagtgatgttgaatttgctattaagttgggttcgattgaaatagttactagc--- 205  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       
T  27255278 tatgtcaataaggttattgaaattaaaaccaatatctagcaaagaa-gtgatgttgaatttgctattaagttgggttcgattgaaatagttactagcaat 27255180  T
Q  206 tctagctaaagccaattattgcaaacgttcac 237  Q
      ||||||||||||||||||||||||||||||    
T  27255179 aatagctaaagccaattattgcaaacgttcac 27255148  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 17507475 - 17507552
Alignment:
Q  21 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||    
T  17507475 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatca-tcttgcattgttattataatccatttttgattgtt 17507552  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 17545739 - 17545662
Alignment:
Q  21 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||    
T  17545739 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatca-tcttgcattgttattataatccatttttgattgtt 17545662  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 27244791 - 27244683
Alignment:
Q  123 tattgaaattaaaagcaatatctagcaaagaaagtgatgttgaatttgctattaagttgggttcgattgaaatagttactagctctagctaaagccaatt 222  Q
    |||||||||||||||||| | ||| || ||||| | |||||||||||| |||||||||  |||||||||||||||||||||  |||||||||| |||| |    
T  27244791 tattgaaattaaaagcaacagctaacagagaaa-taatgttgaatttgttattaagtttagttcgattgaaatagttacta--tctagctaaatccaaat 27244695  T
Q  223 attgcaaacgtt 234  Q
    ||||||||||||    
T  27244694 attgcaaacgtt 27244683  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 27251358 - 27251301
Alignment:
Q  328 tctcaaaaaggaataataaaaatgttagagaaaaccaaacaacaaatttcacaggttc 385  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  27251358 tctcaaaaaggaataataaaaatgttacagaaaaccaaacaacaaatttcactggttc 27251301  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 369
Target Start/End: Complemental strand, 27282698 - 27282631
Alignment:
Q  299 gaaaaagactagaataattgggaaaaggctctcaaaaaggaataataaaaatgttagagaaaaccaaacaa 369  Q
    |||||||||||||||||| |||||||| ||||||||  |||||||| ||||||||||||||| ||||||||    
T  27282698 gaaaaagactagaataat-gggaaaagactctcaaa--ggaataatgaaaatgttagagaaacccaaacaa 27282631  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 15644767 - 15644696
Alignment:
Q  27 cggtggtatcttggcacaccttgtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 99  Q
    ||||||| |||||||||||||||||||   ||||||| |||||||  ||||||||||| ||||||||||||||    
T  15644767 cggtggtttcttggcacaccttgtgctaacgatatcacttttgca-agttaatataattcatttttgcttgtt 15644696  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 136475 - 136405
Alignment:
Q  21 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatcatttttgcattgttaatataatccattttt 92  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  136475 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatca-tcttgcattgttattataatccattttt 136405  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 18309501 - 18309577
Alignment:
Q  21 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| |||||||| |||||    
T  18309501 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatca-tcttgcattgttattataat-catttttgattgtt 18309577  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 25890619 - 25890549
Alignment:
Q  21 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatcatttttgcattgttaatataatccattttt 92  Q
    ||||||||||||||||||||||  |||||| |||||||||||| | ||||||||||| ||||||||||||||    
T  25890619 tgtgtgcggtggtatcttggcattccttgtacttttgatatca-tcttgcattgttattataatccattttt 25890549  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 37322099 - 37322038
Alignment:
Q  38 tggcacaccttgtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 99  Q
    ||||||||||||||||   |  |||||||||||| | |||||||||||||||||||||||||    
T  37322099 tggcacaccttgtgctaaagggatcatttttgcagtattaatataatccatttttgcttgtt 37322038  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 8565290 - 8565326
Alignment:
Q  63 atttttgcattgttaatataatccatttttgcttgtt 99  Q
    ||||||| | |||||||||||||||||||||||||||    
T  8565290 atttttgaagtgttaatataatccatttttgcttgtt 8565326  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 26535601 - 26535522
Alignment:
Q  19 gttgtgtgcggtggtatcttggcacaccttgtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | || |||| ||||||||||||||||||| |||||    
T  26535601 gttgtgtgcggtggtaacttggcacaccttgtgcttttgatatca-tcttacattattaatataatccatttttgattgtt 26535522  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 14853468 - 14853389
Alignment:
Q  20 ttgtgtgcggtggtatcttggcacaccttgtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 99  Q
    |||| ||||||||| |||||||||||||| ||||   ||||||| ||||||| |||||||||||||||||||| ||||||    
T  14853468 ttgtttgcggtggtttcttggcacaccttttgctgacgatatcacttttgcaatgttaatataatccattttttcttgtt 14853389  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 14888626 - 14888736
Alignment:
Q  118 aaggatattgaaattaaaagcaatatctagcaaagaaagtgatgttgaatttgctattaagttgggttcgattgaaatagttactagctctagctaaagc 217  Q
    |||| |||||||||||||||||||| |||  | ||||| ||||||||||||||||||||||||  ||| |||||||||||||||  | |||||||||| |    
T  14888626 aaggttattgaaattaaaagcaatacctaatagagaaa-tgatgttgaatttgctattaagttcagtttgattgaaatagttac--gatctagctaaatc 14888722  T
Q  218 caattattgcaaac 231  Q
    ||| ||||||||||    
T  14888723 caaatattgcaaac 14888736  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 39584575 - 39584498
Alignment:
Q  21 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 99  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||| |||||| |||||||| |||||    
T  39584575 tgtgtgcggtggtatcttggcacatcttgtgcttttgatatca-tttagcattgttattataattcatttttgattgtt 39584498  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 14883365 - 14883469
Alignment:
Q  123 tattgaaattaaaagcaatatctagcaaagaaagtgatgttgaatttgctattaagttgggttcgattgaaatagttactagctctagctaaagccaatt 222  Q
    |||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||  |||||||||||| |||||||   |||||||||| |||| |    
T  14883365 tattgaaattaaaagcaatacctaacaa-gaaa-tgatgttgaatttgctattaagttcagttcgattgaaagagttact--ttctagctaaatccaaat 14883460  T
Q  223 attgcaaac 231  Q
    |||||||||    
T  14883461 attgcaaac 14883469  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 38225684 - 38225648
Alignment:
Q  63 atttttgcattgttaatataatccatttttgcttgtt 99  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  38225684 attttagcagtgttaatataatccatttttgcttgtt 38225648  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 13059481 - 13059404
Alignment:
Q  21 tgtgtgcggtggtatcttggcacaccttgtgcttttgatatcatttttgcattgttaatataatccatttttgcttgtt 99  Q
    |||||||||||| ||||||||||| |||||||||||||||||| | | ||||||||| |||||| |||||||| |||||    
T  13059481 tgtgtgcggtggcatcttggcacatcttgtgcttttgatatca-tctagcattgttattataattcatttttgattgtt 13059404  T

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Target: scaffold0351 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 13625 - 13661
Alignment:
Q  63 atttttgcattgttaatataatccatttttgcttgtt 99  Q
    ||||||||| |||||||||||||||||||||||||||    
T  13625 atttttgcagtgttaatataatccatttttgcttgtt 13661  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 19163798 - 19163831
Alignment:
Q  63 atttttgcattgttaatataatccatttttgctt 96  Q
    ||||||||| ||||||||||||||||||||||||    
T  19163798 atttttgcagtgttaatataatccatttttgctt 19163831  T

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