View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12939_low_4 (Length: 387)

Name: NF12939_low_4
Description: NF12939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12939_low_4
NF12939_low_4
[»] chr1 (2 HSPs)
chr1 (180-379)||(43095198-43095397)
chr1 (1-120)||(43095457-43095576)
[»] chr3 (6 HSPs)
chr3 (180-379)||(6094904-6095103)
chr3 (180-286)||(44162638-44162744)
chr3 (180-286)||(44188758-44188864)
chr3 (1-65)||(44188506-44188570)
chr3 (18-65)||(6094667-6094714)
chr3 (316-379)||(44188866-44188929)
[»] chr2 (4 HSPs)
chr2 (180-286)||(32727886-32727992)
chr2 (180-286)||(32718902-32719008)
chr2 (1-65)||(32727633-32727697)
chr2 (316-379)||(32719010-32719073)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 180 - 379
Target Start/End: Complemental strand, 43095397 - 43095198
Alignment:
Q  180 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 279  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43095397 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 43095298  T
Q  280 tttcctcgcactaacttgagactgcaatcgcgaaagagtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttacctatgct 379  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  43095297 tttcctcgcactaacttgagattgcaatcgcgaaagagtttgcatgcattgtaaagtagtagccgcttgccgctgaacagattgtccttttaccaatgct 43095198  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 43095576 - 43095457
Alignment:
Q  1 ttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagtacagattttgtttaagaaaacaaaatcaaagcatataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43095576 ttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagtgcagattttgtttaagaaaacaaaatcaaagcatataa 43095477  T
Q  101 atgtattgattggactgaac 120  Q
    ||||||||||||||||||||    
T  43095476 atgtattgattggactgaac 43095457  T

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Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 180 - 379
Target Start/End: Original strand, 6094904 - 6095103
Alignment:
Q  180 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 279  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  6094904 ttgaacaaatacttacagcagcttgtaacttgtcaagttcattttcacgtttctgctgcaattggcgttgaaaagattgattctcttcagacattcttat 6095003  T
Q  280 tttcctcgcactaacttgagactgcaatcgcgaaagagtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttacctatgct 379  Q
     |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||| |||||    
T  6095004 cttcctcgcactaacttgagactgcaaccgtgaaagagtttgcatgcattgtaaagtagtagctgcttgtcgttgaacagattgtccttttaccaatgct 6095103  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 44162638 - 44162744
Alignment:
Q  180 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 279  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||| ||    
T  44162638 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttat 44162737  T
Q  280 tttcctc 286  Q
     ||||||    
T  44162738 cttcctc 44162744  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 44188758 - 44188864
Alignment:
Q  180 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 279  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||| ||    
T  44188758 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttat 44188857  T
Q  280 tttcctc 286  Q
     ||||||    
T  44188858 cttcctc 44188864  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44188506 - 44188570
Alignment:
Q  1 ttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagtaca 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44188506 ttgattgtgaactataatcccatttttctccaataggctgcaaatgtatttgccactttagtaca 44188570  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 6094667 - 6094714
Alignment:
Q  18 tcccatttttctccaataggctgcaaatgtattggccactttagtaca 65  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  6094667 tcccatttttctccaataggttgcaaatgtattggccactttagtaca 6094714  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 44188866 - 44188929
Alignment:
Q  316 agtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttacctatgct 379  Q
    |||||||||||||||| |||||||||||||||| || |||||  | |||||||||||| |||||    
T  44188866 agtttgcatgcattgtgaagtagtagccgcttgtcgttgaacataatgtccttttaccaatgct 44188929  T

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Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 32727886 - 32727992
Alignment:
Q  180 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 279  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||| ||    
T  32727886 ttgaacaaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttat 32727985  T
Q  280 tttcctc 286  Q
     ||||||    
T  32727986 cttcctc 32727992  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 32718902 - 32719008
Alignment:
Q  180 ttgaacaaatacttacaacagcttgtaacttgtcaagttccttttcgcgtttctgctgcaattggcgttgaaaagattgattctcctcagacattctgat 279  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||| ||    
T  32718902 ttgaataaatacttacagcagcttgtaacttgtcaagttccttttcacgattctgctgcaattggcgttgaaaagattcattctcttcagacattcttat 32719001  T
Q  280 tttcctc 286  Q
     ||||||    
T  32719002 cttcctc 32719008  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32727633 - 32727697
Alignment:
Q  1 ttgattgtgaactataatcccatttttctccaataggctgcaaatgtattggccactttagtaca 65  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  32727633 ttgattgtgaactataatcccgtttttctccaataggctgcaaatgtatttgccactttagtaca 32727697  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 32719010 - 32719073
Alignment:
Q  316 agtttgcatgcattgtaaagtagtagccgcttgccgctgaactgattgtccttttacctatgct 379  Q
    |||||||||||||||| |||||||||||||||| || ||||| || |||||||||||| |||||    
T  32719010 agtttgcatgcattgtgaagtagtagccgcttgtcgttgaacagaatgtccttttaccaatgct 32719073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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