View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12939_low_5 (Length: 347)
Name: NF12939_low_5
Description: NF12939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12939_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 7300536 - 7300221
Alignment:
| Q |
14 |
ttctacttaaaattcatttagtcaatagttacaagtcacagttatcagacaattttttctactgaatctagctggtaattgctcatatttgactataatt |
113 |
Q |
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| T |
7300536 |
ttctacttaaaattcatttagtcaagagttacaagtcacagttatcagacaattttttctactgaatctagctgga---tgctcatatttgactacaatt |
7300440 |
T |
|
| Q |
114 |
atctgtcttaatgactgtgatttgctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccagcatctttga |
213 |
Q |
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| T |
7300439 |
atctgtcttaatgactgtgatttgctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccagcatctttga |
7300340 |
T |
|
| Q |
214 |
gaagaggaacaagagaaccattaatatgaaaagccaaaaccctatccatagaaccaactaatttgccaccaatgaaaacaactggaagtgatgttgaatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7300339 |
gaagaggaacaagagaaccattaatatgaaaagccaaaactctatccatagaaccaactaatttgccaccaatgaaaacaaccggaagtgatgttgaatt |
7300240 |
T |
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| Q |
314 |
tccaagtaacctcatcaat |
332 |
Q |
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| T |
7300239 |
tccaagtaacctcatcaat |
7300221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 7333156 - 7333455
Alignment:
| Q |
16 |
ctacttaaaattcatttagtcaatagttacaagtcacagttatcagacaattttttctactgaatctagctggtaattgctcatatttgactataattat |
115 |
Q |
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|||||||||||||| |||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||| | |||| | |||| |
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| T |
7333156 |
ctacttaaaattcagttagtcaagagttgcaagcctcagttatcagacaattttttctactgaatctagctgga---tgctcatatatcactacagttat |
7333252 |
T |
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| Q |
116 |
ctgtcttaatgactgtgatttgctacatttactgcaagtcagtgattatgatcaataatcagtaattaattaaagccataaagcaccagcatctttgaga |
215 |
Q |
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| T |
7333253 |
cagtctta-------------gctacatttactgcaagtaagtgcttatgatcactaatcat--attaattaaagccataaagcaccagcatctttgaga |
7333337 |
T |
|
| Q |
216 |
agaggaacaagagaaccattaatatgaaaagccaaaaccctatccatagaaccaactaatttgccaccaatgaaaacaactggaagtgatgttgaatttc |
315 |
Q |
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| T |
7333338 |
agtggaacaagagaaccattaatatgaaaagccaaaactctatccatagaaccaactaatttgccaccaatgaaaacaactggaagtgatgttgaatttc |
7333437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 182 - 333
Target Start/End: Original strand, 7340093 - 7340244
Alignment:
| Q |
182 |
taattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgaaaagccaaaaccctatccatagaaccaactaatttgcca |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
7340093 |
taattaaagccataaagcaccagcatctttgagaagaggaataagtgaactattgatatgaaaagccaaaactctatccatagaaccaactaatttccca |
7340192 |
T |
|
| Q |
282 |
ccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatg |
333 |
Q |
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| T |
7340193 |
ccaatgaaaacaactggaagtgatgttgaatttccaagtaacctcatcaatg |
7340244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 7376227 - 7376326
Alignment:
| Q |
154 |
tcagtgattatgatcaataatcagtaattaattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgaaaagccaaaac |
253 |
Q |
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|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7376227 |
tcagtgcttatgatcagtaatgagtaattaattaaagccataaagcaccagcatctttgagaagaggaacaagagaaccgttaatatgaaaagccaaaac |
7376326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 8909158 - 8909045
Alignment:
| Q |
187 |
aaagccataaagcaccagcatctttgagaagaggaacaagagaaccattaatatgaaaagccaaaaccctatccatagaaccaactaatttgccaccaat |
286 |
Q |
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||||||| | ||||||||| | |||||||||||||||||||||||||||||||||| |||||| || |||||||||| ||||| | ||| |||||||| |
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| T |
8909158 |
aaagccaaagagcaccagcttgtttgagaagaggaacaagagaaccattaatatgacaagccatgactctatccatagtaccaataagtttaccaccaat |
8909059 |
T |
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| Q |
287 |
gaaaacaactggaa |
300 |
Q |
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||||||||| |||| |
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| T |
8909058 |
gaaaacaacaggaa |
8909045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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