View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12939_low_8 (Length: 239)

Name: NF12939_low_8
Description: NF12939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12939_low_8
NF12939_low_8
[»] chr8 (20 HSPs)
chr8 (16-221)||(9999431-9999644)
chr8 (143-217)||(35643685-35643760)
chr8 (100-136)||(39953287-39953323)
chr8 (100-129)||(490565-490594)
chr8 (100-129)||(1928610-1928639)
chr8 (96-129)||(2216516-2216549)
chr8 (100-129)||(11523746-11523775)
chr8 (100-129)||(12491161-12491190)
chr8 (100-129)||(14742105-14742134)
chr8 (96-125)||(23492268-23492297)
chr8 (100-129)||(25473426-25473455)
chr8 (100-129)||(27556325-27556354)
chr8 (100-129)||(30689965-30689994)
chr8 (100-129)||(32931190-32931219)
chr8 (96-129)||(35914620-35914653)
chr8 (100-129)||(36394971-36395000)
chr8 (100-129)||(36545379-36545408)
chr8 (100-129)||(36565264-36565293)
chr8 (100-129)||(44529455-44529484)
chr8 (100-129)||(45419465-45419494)
[»] chr7 (35 HSPs)
chr7 (138-221)||(29653620-29653704)
chr7 (96-129)||(46355875-46355908)
chr7 (86-133)||(47155181-47155228)
chr7 (100-129)||(2885745-2885774)
chr7 (100-129)||(6263489-6263518)
chr7 (100-129)||(6375098-6375127)
chr7 (100-129)||(7273330-7273359)
chr7 (100-129)||(11594190-11594219)
chr7 (100-129)||(12841298-12841327)
chr7 (96-129)||(15682404-15682437)
chr7 (100-133)||(17759499-17759532)
chr7 (100-129)||(27649010-27649039)
chr7 (100-129)||(28208351-28208380)
chr7 (100-129)||(28708611-28708640)
chr7 (100-129)||(29650614-29650643)
chr7 (100-129)||(30814148-30814177)
chr7 (100-129)||(31005435-31005464)
chr7 (100-129)||(31681043-31681072)
chr7 (100-129)||(31682625-31682654)
chr7 (100-129)||(31869125-31869154)
chr7 (100-129)||(34035177-34035206)
chr7 (100-133)||(34745973-34746006)
chr7 (100-129)||(35906224-35906253)
chr7 (100-129)||(36652222-36652251)
chr7 (100-129)||(37618175-37618204)
chr7 (100-129)||(39906395-39906424)
chr7 (100-129)||(40630664-40630693)
chr7 (100-129)||(40979951-40979980)
chr7 (100-129)||(42187671-42187700)
chr7 (100-129)||(42969928-42969957)
chr7 (100-129)||(43281904-43281933)
chr7 (100-129)||(45836505-45836534)
chr7 (105-133)||(22174226-22174254)
chr7 (101-129)||(25891118-25891146)
chr7 (101-129)||(33103156-33103184)
[»] scaffold0373 (1 HSPs)
scaffold0373 (138-184)||(2375-2422)
[»] chr4 (25 HSPs)
chr4 (138-184)||(6843776-6843823)
chr4 (96-133)||(4136762-4136799)
chr4 (100-130)||(40018212-40018242)
chr4 (100-130)||(45209228-45209258)
chr4 (100-129)||(436459-436488)
chr4 (100-129)||(4441083-4441112)
chr4 (100-129)||(7544554-7544583)
chr4 (100-129)||(7947167-7947196)
chr4 (100-129)||(15661895-15661924)
chr4 (100-129)||(19969411-19969440)
chr4 (100-129)||(21528518-21528547)
chr4 (100-129)||(27450203-27450232)
chr4 (100-129)||(28351789-28351818)
chr4 (100-129)||(30634129-30634158)
chr4 (100-129)||(31959837-31959866)
chr4 (100-129)||(32479268-32479297)
chr4 (100-129)||(35690501-35690530)
chr4 (100-129)||(49939757-49939786)
chr4 (100-129)||(50238638-50238667)
chr4 (100-129)||(50238724-50238753)
chr4 (100-129)||(50862861-50862890)
chr4 (100-129)||(52569538-52569567)
chr4 (100-129)||(55007976-55008005)
chr4 (100-132)||(1380597-1380629)
chr4 (101-129)||(46236719-46236747)
[»] chr5 (20 HSPs)
chr5 (96-129)||(36551376-36551409)
chr5 (100-184)||(39322102-39322187)
chr5 (100-130)||(7678706-7678736)
chr5 (100-129)||(408517-408546)
chr5 (100-129)||(1275494-1275523)
chr5 (100-129)||(2915519-2915548)
chr5 (100-129)||(3302074-3302103)
chr5 (100-129)||(4496614-4496643)
chr5 (100-129)||(5558371-5558400)
chr5 (100-129)||(13561409-13561438)
chr5 (100-129)||(18855837-18855866)
chr5 (100-129)||(20457003-20457032)
chr5 (100-129)||(26884712-26884741)
chr5 (100-129)||(27386570-27386599)
chr5 (100-133)||(28411902-28411935)
chr5 (100-129)||(28985313-28985342)
chr5 (100-129)||(29816612-29816641)
chr5 (100-129)||(30213805-30213834)
chr5 (100-129)||(38685197-38685226)
chr5 (100-128)||(1287602-1287630)
[»] chr3 (24 HSPs)
chr3 (96-129)||(21862760-21862793)
chr3 (96-129)||(32170635-32170668)
chr3 (96-129)||(53519810-53519843)
chr3 (96-132)||(32350158-32350194)
chr3 (96-136)||(46140630-46140670)
chr3 (100-131)||(659753-659784)
chr3 (100-129)||(5169062-5169091)
chr3 (100-129)||(7278694-7278723)
chr3 (100-129)||(12096728-12096757)
chr3 (100-129)||(24778632-24778661)
chr3 (96-133)||(26990438-26990475)
chr3 (96-129)||(28245667-28245700)
chr3 (100-129)||(31566184-31566213)
chr3 (100-129)||(38060944-38060973)
chr3 (100-129)||(40273228-40273257)
chr3 (96-129)||(40991661-40991694)
chr3 (100-129)||(41529991-41530020)
chr3 (100-129)||(46148258-46148287)
chr3 (100-129)||(48508465-48508494)
chr3 (96-129)||(49042167-49042200)
chr3 (100-129)||(52139030-52139059)
chr3 (100-129)||(52927871-52927900)
chr3 (101-129)||(38850351-38850379)
chr3 (101-129)||(49888417-49888445)
[»] chr2 (32 HSPs)
chr2 (96-129)||(38430114-38430147)
chr2 (143-184)||(12026084-12026126)
chr2 (102-132)||(31744202-31744232)
chr2 (100-129)||(227419-227448)
chr2 (100-129)||(451671-451700)
chr2 (96-129)||(2610818-2610851)
chr2 (100-129)||(3635346-3635375)
chr2 (100-129)||(3720438-3720467)
chr2 (100-129)||(4807825-4807854)
chr2 (100-129)||(8181010-8181039)
chr2 (100-129)||(9531623-9531652)
chr2 (100-129)||(12474950-12474979)
chr2 (100-129)||(12520085-12520114)
chr2 (100-133)||(15836166-15836199)
chr2 (100-129)||(16521030-16521059)
chr2 (96-129)||(17429280-17429313)
chr2 (100-129)||(17670698-17670727)
chr2 (101-130)||(19225010-19225039)
chr2 (100-129)||(25834908-25834937)
chr2 (100-129)||(28367353-28367382)
chr2 (100-129)||(28508908-28508937)
chr2 (100-129)||(30306262-30306291)
chr2 (100-133)||(33971530-33971563)
chr2 (100-129)||(38328393-38328422)
chr2 (96-184)||(38860339-38860428)
chr2 (100-129)||(39709224-39709253)
chr2 (100-129)||(41763066-41763095)
chr2 (100-129)||(43573153-43573182)
chr2 (96-129)||(45077959-45077992)
chr2 (101-129)||(3866302-3866330)
chr2 (86-129)||(23354109-23354153)
chr2 (101-129)||(36183681-36183709)
[»] chr6 (8 HSPs)
chr6 (96-130)||(9109528-9109562)
chr6 (97-127)||(12133922-12133952)
chr6 (100-129)||(3206482-3206511)
chr6 (100-129)||(9707000-9707029)
chr6 (100-129)||(12890805-12890834)
chr6 (100-129)||(28085606-28085635)
chr6 (100-129)||(31819061-31819090)
chr6 (100-129)||(34934853-34934882)
[»] chr1 (29 HSPs)
chr1 (100-130)||(38869111-38869141)
chr1 (143-216)||(42501237-42501311)
chr1 (100-129)||(1210975-1211004)
chr1 (100-129)||(2544823-2544852)
chr1 (100-129)||(4029352-4029381)
chr1 (100-129)||(4318868-4318897)
chr1 (100-129)||(4590555-4590584)
chr1 (100-129)||(21769734-21769763)
chr1 (100-129)||(22175375-22175404)
chr1 (100-129)||(25979254-25979283)
chr1 (100-129)||(26299298-26299327)
chr1 (100-129)||(28090717-28090746)
chr1 (100-129)||(28533697-28533726)
chr1 (100-129)||(29577482-29577511)
chr1 (100-129)||(30202153-30202182)
chr1 (100-129)||(32082779-32082808)
chr1 (100-129)||(32404549-32404578)
chr1 (96-133)||(34705064-34705101)
chr1 (100-129)||(37311778-37311807)
chr1 (100-129)||(37462899-37462928)
chr1 (100-129)||(41165512-41165541)
chr1 (100-129)||(41560459-41560488)
chr1 (100-129)||(43481821-43481850)
chr1 (100-129)||(44941799-44941828)
chr1 (100-129)||(46423239-46423268)
chr1 (100-129)||(49347416-49347445)
chr1 (96-129)||(50257800-50257833)
chr1 (100-129)||(52561612-52561641)
chr1 (100-129)||(52921310-52921339)
[»] scaffold1318 (1 HSPs)
scaffold1318 (100-129)||(561-590)
[»] scaffold0168 (1 HSPs)
scaffold0168 (100-129)||(28912-28941)
[»] scaffold0018 (1 HSPs)
scaffold0018 (100-129)||(31698-31727)
[»] scaffold0113 (1 HSPs)
scaffold0113 (101-129)||(11573-11601)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 9999644 - 9999431
Alignment:
Q  16 attgtaaacaatcaaaagatcaggtattttaaattcaaacaacaaattaataacttcatcttcattacttatcaatcttcatctcactaagtggggtcgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9999644 attgtaaacaatcaaaagatcaggtattttaaattcaaacaacaaattaataacttcatcttcattacttatcaatcttcatctcactaagtggggtcgg 9999545  T
Q  116 cta--------catggatcaaacaactccttataacatatttctatcaaactcatcaatctctgatctttcttaataattcctctcacagttttcctagt 207  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9999544 ctacatgcctacatggatcaaacaactccttataacatatttctatcaaactcatcaatctctgatctttcttaataattcctctcacagttttcctagt 9999445  T
Q  208 tcttcctctgtctc 221  Q
    ||||||||||||||    
T  9999444 tcttcctctgtctc 9999431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 35643685 - 35643760
Alignment:
Q  143 catatttctatcaaactcatcaatctct-gatctttcttaataattcctctcacagttttcctagttcttcctctg 217  Q
    |||||||| ||| ||||||| ||||||| ||||||||||||||||| |||| | |||||| |||| ||||||||||    
T  35643685 catatttcgatccaactcattaatctctagatctttcttaataatttctcttatagtttttctaggtcttcctctg 35643760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 39953287 - 39953323
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaacaactcc 136  Q
    ||||||||||||||||||||||| |||||||||||||    
T  39953287 cactaagtggggtcggctacatgaatcaaacaactcc 39953323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 490594 - 490565
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  490594 cactaagtggggtcggctacatggatcaaa 490565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 1928610 - 1928639
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  1928610 cactaagtggggtcggctacatggatcaaa 1928639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 2216549 - 2216516
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    |||||||| |||||||||||||||||||||||||    
T  2216549 atctcactgagtggggtcggctacatggatcaaa 2216516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 11523746 - 11523775
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  11523746 cactaagtggggtcggctacatggatcaaa 11523775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 12491161 - 12491190
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  12491161 cactaagtggggtcggctacatggatcaaa 12491190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 14742105 - 14742134
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  14742105 cactaagtggggtcggctacatggatcaaa 14742134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 23492297 - 23492268
Alignment:
Q  96 atctcactaagtggggtcggctacatggat 125  Q
    ||||||||||||||||||||||||||||||    
T  23492297 atctcactaagtggggtcggctacatggat 23492268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 25473426 - 25473455
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  25473426 cactaagtggggtcggctacatggatcaaa 25473455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 27556325 - 27556354
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  27556325 cactaagtggggtcggctacatggatcaaa 27556354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 30689994 - 30689965
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  30689994 cactaagtggggtcggctacatggatcaaa 30689965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 32931219 - 32931190
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  32931219 cactaagtggggtcggctacatggatcaaa 32931190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 35914620 - 35914653
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||| |||||||||||||||    
T  35914620 atctcactaagtggggtcagctacatggatcaaa 35914653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 36394971 - 36395000
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  36394971 cactaagtggggtcggctacatggatcaaa 36395000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 36545408 - 36545379
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  36545408 cactaagtggggtcggctacatggatcaaa 36545379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 36565264 - 36565293
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  36565264 cactaagtggggtcggctacatggatcaaa 36565293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 44529484 - 44529455
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  44529484 cactaagtggggtcggctacatggatcaaa 44529455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 45419494 - 45419465
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  45419494 cactaagtggggtcggctacatggatcaaa 45419465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 29653620 - 29653704
Alignment:
Q  138 tataacatatttctatcaaactcatcaatctct-gatctttcttaataattcctctcacagttttcctagttcttcctctgtctc 221  Q
    |||| |||||||||||| ||||||| ||||||| |||||||||||||| || |||| |||||||| || | ||||| ||||||||    
T  29653620 tatatcatatttctatctaactcattaatctctagatctttcttaatagtttctcttacagtttttcttggtcttcttctgtctc 29653704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 46355875 - 46355908
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||||||    
T  46355875 atctcactaagtggggtcggctacatggatcaaa 46355908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 47155181 - 47155228
Alignment:
Q  86 atcaatcttcatctcactaagtggggtcggctacatggatcaaacaac 133  Q
    ||||| ||| ||| ||||||||||||||||||||||| ||||||||||    
T  47155181 atcaagctttatcccactaagtggggtcggctacatgaatcaaacaac 47155228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 2885745 - 2885774
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  2885745 cactaagtggggtcggctacatggatcaaa 2885774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 6263518 - 6263489
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  6263518 cactaagtggggtcggctacatggatcaaa 6263489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 6375127 - 6375098
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  6375127 cactaagtggggtcggctacatggatcaaa 6375098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 7273359 - 7273330
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  7273359 cactaagtggggtcggctacatggatcaaa 7273330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 11594219 - 11594190
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  11594219 cactaagtggggtcggctacatggatcaaa 11594190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 12841298 - 12841327
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  12841298 cactaagtggggtcggctacatggatcaaa 12841327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 15682437 - 15682404
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||| ||||||||||||||||    
T  15682437 atctcactaagtggggttggctacatggatcaaa 15682404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 17759532 - 17759499
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaacaac 133  Q
    ||||||||||||||||||||||| ||||||||||    
T  17759532 cactaagtggggtcggctacatgaatcaaacaac 17759499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 27649039 - 27649010
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  27649039 cactaagtggggtcggctacatggatcaaa 27649010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 28208351 - 28208380
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28208351 cactaagtggggtcggctacatggatcaaa 28208380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 28708640 - 28708611
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28708640 cactaagtggggtcggctacatggatcaaa 28708611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 29650643 - 29650614
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  29650643 cactaagtggggtcggctacatggatcaaa 29650614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 30814148 - 30814177
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  30814148 cactaagtggggtcggctacatggatcaaa 30814177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 31005464 - 31005435
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  31005464 cactaagtggggtcggctacatggatcaaa 31005435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 31681043 - 31681072
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  31681043 cactaagtggggtcggctacatggatcaaa 31681072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 31682625 - 31682654
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  31682625 cactaagtggggtcggctacatggatcaaa 31682654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 31869125 - 31869154
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  31869125 cactaagtggggtcggctacatggatcaaa 31869154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 34035177 - 34035206
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  34035177 cactaagtggggtcggctacatggatcaaa 34035206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 34746006 - 34745973
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaacaac 133  Q
    ||||||||||||||||||||||| ||||||||||    
T  34746006 cactaagtggggtcggctacatgaatcaaacaac 34745973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 35906224 - 35906253
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  35906224 cactaagtggggtcggctacatggatcaaa 35906253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 36652251 - 36652222
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  36652251 cactaagtggggtcggctacatggatcaaa 36652222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 37618204 - 37618175
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  37618204 cactaagtggggtcggctacatggatcaaa 37618175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 39906395 - 39906424
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  39906395 cactaagtggggtcggctacatggatcaaa 39906424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 40630693 - 40630664
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  40630693 cactaagtggggtcggctacatggatcaaa 40630664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 40979951 - 40979980
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  40979951 cactaagtggggtcggctacatggatcaaa 40979980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 42187700 - 42187671
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  42187700 cactaagtggggtcggctacatggatcaaa 42187671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 42969957 - 42969928
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  42969957 cactaagtggggtcggctacatggatcaaa 42969928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 43281933 - 43281904
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  43281933 cactaagtggggtcggctacatggatcaaa 43281904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 45836505 - 45836534
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  45836505 cactaagtggggtcggctacatggatcaaa 45836534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 22174254 - 22174226
Alignment:
Q  105 agtggggtcggctacatggatcaaacaac 133  Q
    |||||||||||||||||||||||||||||    
T  22174254 agtggggtcggctacatggatcaaacaac 22174226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 25891146 - 25891118
Alignment:
Q  101 actaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||||||||||||||    
T  25891146 actaagtggggtcggctacatggatcaaa 25891118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 33103184 - 33103156
Alignment:
Q  101 actaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||||||||||||||    
T  33103184 actaagtggggtcggctacatggatcaaa 33103156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 2375 - 2422
Alignment:
Q  138 tataacatatttctatcaaactcatcaatctct-gatctttcttaata 184  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  2375 tataacatatttctatcaaactcattaatctctagatctttcttaata 2422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 6843823 - 6843776
Alignment:
Q  138 tataacatatttctatcaaactcatcaatctct-gatctttcttaata 184  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  6843823 tataacatatttctatcaaactcattaatctctagatctttcttaata 6843776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 4136762 - 4136799
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaacaac 133  Q
    |||||||||||| |||||||||||||||||||||||||    
T  4136762 atctcactaagtagggtcggctacatggatcaaacaac 4136799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 130
Target Start/End: Original strand, 40018212 - 40018242
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaac 130  Q
    |||||||||||||||||||||||||||||||    
T  40018212 cactaagtggggtcggctacatggatcaaac 40018242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 130
Target Start/End: Original strand, 45209228 - 45209258
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaac 130  Q
    |||||||||||||||||||||||||||||||    
T  45209228 cactaagtggggtcggctacatggatcaaac 45209258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 436488 - 436459
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  436488 cactaagtggggtcggctacatggatcaaa 436459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 4441112 - 4441083
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  4441112 cactaagtggggtcggctacatggatcaaa 4441083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 7544554 - 7544583
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  7544554 cactaagtggggtcggctacatggatcaaa 7544583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 7947196 - 7947167
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  7947196 cactaagtggggtcggctacatggatcaaa 7947167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 15661895 - 15661924
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  15661895 cactaagtggggtcggctacatggatcaaa 15661924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 19969440 - 19969411
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  19969440 cactaagtggggtcggctacatggatcaaa 19969411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 21528547 - 21528518
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  21528547 cactaagtggggtcggctacatggatcaaa 21528518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 27450203 - 27450232
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  27450203 cactaagtggggtcggctacatggatcaaa 27450232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 28351818 - 28351789
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28351818 cactaagtggggtcggctacatggatcaaa 28351789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 30634129 - 30634158
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  30634129 cactaagtggggtcggctacatggatcaaa 30634158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 31959837 - 31959866
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  31959837 cactaagtggggtcggctacatggatcaaa 31959866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 32479297 - 32479268
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  32479297 cactaagtggggtcggctacatggatcaaa 32479268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 35690530 - 35690501
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  35690530 cactaagtggggtcggctacatggatcaaa 35690501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 49939757 - 49939786
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  49939757 cactaagtggggtcggctacatggatcaaa 49939786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 50238638 - 50238667
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  50238638 cactaagtggggtcggctacatggatcaaa 50238667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 50238724 - 50238753
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  50238724 cactaagtggggtcggctacatggatcaaa 50238753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 50862890 - 50862861
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  50862890 cactaagtggggtcggctacatggatcaaa 50862861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 52569538 - 52569567
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  52569538 cactaagtggggtcggctacatggatcaaa 52569567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 55008005 - 55007976
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  55008005 cactaagtggggtcggctacatggatcaaa 55007976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 1380629 - 1380597
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaacaa 132  Q
    ||||||||| |||||||||||||||||||||||    
T  1380629 cactaagtgaggtcggctacatggatcaaacaa 1380597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 46236747 - 46236719
Alignment:
Q  101 actaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||||||||||||||    
T  46236747 actaagtggggtcggctacatggatcaaa 46236719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 36551409 - 36551376
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||||||    
T  36551409 atctcactaagtggggtcggctacatggatcaaa 36551376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 39322102 - 39322187
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaacaactccttataacatatttctatcaaactcatcaatctct-gatctttcttaata 184  Q
    ||||||||||| ||||||||||||||||||  || || || |  ||||||||||| ||||||| ||||| | ||||||||||||||    
T  39322102 cactaagtgggatcggctacatggatcaaattacgccataaactatatttctatccaactcattaatctttagatctttcttaata 39322187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 130
Target Start/End: Complemental strand, 7678736 - 7678706
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaac 130  Q
    |||||||||||||||||||||||||||||||    
T  7678736 cactaagtggggtcggctacatggatcaaac 7678706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 408517 - 408546
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  408517 cactaagtggggtcggctacatggatcaaa 408546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 1275523 - 1275494
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  1275523 cactaagtggggtcggctacatggatcaaa 1275494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 2915519 - 2915548
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  2915519 cactaagtggggtcggctacatggatcaaa 2915548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 3302103 - 3302074
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  3302103 cactaagtggggtcggctacatggatcaaa 3302074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 4496643 - 4496614
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  4496643 cactaagtggggtcggctacatggatcaaa 4496614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 5558400 - 5558371
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  5558400 cactaagtggggtcggctacatggatcaaa 5558371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 13561409 - 13561438
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  13561409 cactaagtggggtcggctacatggatcaaa 13561438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 18855866 - 18855837
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  18855866 cactaagtggggtcggctacatggatcaaa 18855837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 20457032 - 20457003
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  20457032 cactaagtggggtcggctacatggatcaaa 20457003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 26884712 - 26884741
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  26884712 cactaagtggggtcggctacatggatcaaa 26884741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 27386599 - 27386570
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  27386599 cactaagtggggtcggctacatggatcaaa 27386570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 28411935 - 28411902
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaacaac 133  Q
    ||||||||||||||||||||||| ||||||||||    
T  28411935 cactaagtggggtcggctacatgaatcaaacaac 28411902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 28985342 - 28985313
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28985342 cactaagtggggtcggctacatggatcaaa 28985313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 29816641 - 29816612
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  29816641 cactaagtggggtcggctacatggatcaaa 29816612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 30213834 - 30213805
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  30213834 cactaagtggggtcggctacatggatcaaa 30213805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 38685226 - 38685197
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  38685226 cactaagtggggtcggctacatggatcaaa 38685197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 128
Target Start/End: Original strand, 1287602 - 1287630
Alignment:
Q  100 cactaagtggggtcggctacatggatcaa 128  Q
    |||||||||||||||||||||||||||||    
T  1287602 cactaagtggggtcggctacatggatcaa 1287630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 21862760 - 21862793
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||||||    
T  21862760 atctcactaagtggggtcggctacatggatcaaa 21862793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 32170668 - 32170635
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||||||    
T  32170668 atctcactaagtggggtcggctacatggatcaaa 32170635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 53519843 - 53519810
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||||||    
T  53519843 atctcactaagtggggtcggctacatggatcaaa 53519810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 32350158 - 32350194
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaacaa 132  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32350158 atctcactaagttgggtcggctacatggatcaaacaa 32350194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 46140670 - 46140630
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaacaactcc 136  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  46140670 atctcacaaagtggggtcgactacatggatcaaacaactcc 46140630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 131
Target Start/End: Complemental strand, 659784 - 659753
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaaca 131  Q
    ||||||||||||||||||||||||||||||||    
T  659784 cactaagtggggtcggctacatggatcaaaca 659753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 5169091 - 5169062
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  5169091 cactaagtggggtcggctacatggatcaaa 5169062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 7278723 - 7278694
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  7278723 cactaagtggggtcggctacatggatcaaa 7278694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 12096728 - 12096757
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  12096728 cactaagtggggtcggctacatggatcaaa 12096757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 24778632 - 24778661
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  24778632 cactaagtggggtcggctacatggatcaaa 24778661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 26990475 - 26990438
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaacaac 133  Q
    |||||||||||||||||||||||| || ||||||||||    
T  26990475 atctcactaagtggggtcggctacgtgaatcaaacaac 26990438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 28245700 - 28245667
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||| ||||||||||||||||||    
T  28245700 atctcactaagtgggatcggctacatggatcaaa 28245667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 31566184 - 31566213
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  31566184 cactaagtggggtcggctacatggatcaaa 31566213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 38060973 - 38060944
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  38060973 cactaagtggggtcggctacatggatcaaa 38060944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 40273228 - 40273257
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  40273228 cactaagtggggtcggctacatggatcaaa 40273257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 40991694 - 40991661
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||| |||||||||||||||    
T  40991694 atctcactaagtggggtcagctacatggatcaaa 40991661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 41530020 - 41529991
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  41530020 cactaagtggggtcggctacatggatcaaa 41529991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 46148287 - 46148258
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  46148287 cactaagtggggtcggctacatggatcaaa 46148258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 48508494 - 48508465
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  48508494 cactaagtggggtcggctacatggatcaaa 48508465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 49042200 - 49042167
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||| ||||||||||||||||||||||||||    
T  49042200 atctcaccaagtggggtcggctacatggatcaaa 49042167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 52139059 - 52139030
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  52139059 cactaagtggggtcggctacatggatcaaa 52139030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 52927871 - 52927900
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  52927871 cactaagtggggtcggctacatggatcaaa 52927900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 38850379 - 38850351
Alignment:
Q  101 actaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||||||||||||||    
T  38850379 actaagtggggtcggctacatggatcaaa 38850351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 49888445 - 49888417
Alignment:
Q  101 actaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||||||||||||||    
T  49888445 actaagtggggtcggctacatggatcaaa 49888417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 38430147 - 38430114
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||||||    
T  38430147 atctcactaagtggggtcggctacatggatcaaa 38430114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 12026084 - 12026126
Alignment:
Q  143 catatttctatcaaactcatcaatctct-gatctttcttaata 184  Q
    |||||||||||||||||||| ||||||| ||||||||||||||    
T  12026084 catatttctatcaaactcattaatctctagatctttcttaata 12026126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 132
Target Start/End: Complemental strand, 31744232 - 31744202
Alignment:
Q  102 ctaagtggggtcggctacatggatcaaacaa 132  Q
    |||||||||||||||||||||||||||||||    
T  31744232 ctaagtggggtcggctacatggatcaaacaa 31744202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 227448 - 227419
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  227448 cactaagtggggtcggctacatggatcaaa 227419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 451671 - 451700
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  451671 cactaagtggggtcggctacatggatcaaa 451700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 2610851 - 2610818
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||||| |||||||||||||    
T  2610851 atctcactaagtggggtcggttacatggatcaaa 2610818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 3635346 - 3635375
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  3635346 cactaagtggggtcggctacatggatcaaa 3635375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 3720438 - 3720467
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  3720438 cactaagtggggtcggctacatggatcaaa 3720467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 4807854 - 4807825
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  4807854 cactaagtggggtcggctacatggatcaaa 4807825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 8181039 - 8181010
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  8181039 cactaagtggggtcggctacatggatcaaa 8181010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 9531623 - 9531652
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  9531623 cactaagtggggtcggctacatggatcaaa 9531652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 12474950 - 12474979
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  12474950 cactaagtggggtcggctacatggatcaaa 12474979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 12520085 - 12520114
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  12520085 cactaagtggggtcggctacatggatcaaa 12520114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 15836199 - 15836166
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaacaac 133  Q
    ||||||||||||||||||||||||| ||||||||    
T  15836199 cactaagtggggtcggctacatggaccaaacaac 15836166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 16521030 - 16521059
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  16521030 cactaagtggggtcggctacatggatcaaa 16521059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 17429313 - 17429280
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||| ||||||    
T  17429313 atctcactaagtggggtcggctacatgaatcaaa 17429280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 17670727 - 17670698
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  17670727 cactaagtggggtcggctacatggatcaaa 17670698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 130
Target Start/End: Complemental strand, 19225039 - 19225010
Alignment:
Q  101 actaagtggggtcggctacatggatcaaac 130  Q
    ||||||||||||||||||||||||||||||    
T  19225039 actaagtggggtcggctacatggatcaaac 19225010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 25834937 - 25834908
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  25834937 cactaagtggggtcggctacatggatcaaa 25834908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 28367382 - 28367353
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28367382 cactaagtggggtcggctacatggatcaaa 28367353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 28508937 - 28508908
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28508937 cactaagtggggtcggctacatggatcaaa 28508908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 30306291 - 30306262
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  30306291 cactaagtggggtcggctacatggatcaaa 30306262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 33971563 - 33971530
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaacaac 133  Q
    ||||| ||||||||||||||||||||||||||||    
T  33971563 cactaggtggggtcggctacatggatcaaacaac 33971530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 38328393 - 38328422
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  38328393 cactaagtggggtcggctacatggatcaaa 38328422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 38860428 - 38860339
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaacaactccttataacatatttctatcaaactcatcaatctct-gatctttcttaata 184  Q
    |||||||| || ||||| ||||||||||||||||| || || || | |||||| | ||  ||||||| ||||||| ||||||||||||||    
T  38860428 atctcacttagcggggttggctacatggatcaaactacgccataaaccatattgcgatacaactcatgaatctctagatctttcttaata 38860339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 39709224 - 39709253
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  39709224 cactaagtggggtcggctacatggatcaaa 39709253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 41763066 - 41763095
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  41763066 cactaagtggggtcggctacatggatcaaa 41763095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 43573153 - 43573182
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  43573153 cactaagtggggtcggctacatggatcaaa 43573182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 45077992 - 45077959
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||||| |||||||||||||    
T  45077992 atctcactaagtggggtcggttacatggatcaaa 45077959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 3866330 - 3866302
Alignment:
Q  101 actaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||||||||||||||    
T  3866330 actaagtggggtcggctacatggatcaaa 3866302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 23354153 - 23354109
Alignment:
Q  86 atcaatcttcatctcactaagtgggg-tcggctacatggatcaaa 129  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||||    
T  23354153 atcaatctttatcccactaagtgggggtcggctacatggatcaaa 23354109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 36183709 - 36183681
Alignment:
Q  101 actaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||||||||||||||    
T  36183709 actaagtggggtcggctacatggatcaaa 36183681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 9109528 - 9109562
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaac 130  Q
    |||||||||| ||||||||||||||||||||||||    
T  9109528 atctcactaactggggtcggctacatggatcaaac 9109562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 12133922 - 12133952
Alignment:
Q  97 tctcactaagtggggtcggctacatggatca 127  Q
    |||||||||||||||||||||||||||||||    
T  12133922 tctcactaagtggggtcggctacatggatca 12133952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 3206482 - 3206511
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  3206482 cactaagtggggtcggctacatggatcaaa 3206511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 9707029 - 9707000
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  9707029 cactaagtggggtcggctacatggatcaaa 9707000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 12890834 - 12890805
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  12890834 cactaagtggggtcggctacatggatcaaa 12890805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 28085635 - 28085606
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28085635 cactaagtggggtcggctacatggatcaaa 28085606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 31819090 - 31819061
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  31819090 cactaagtggggtcggctacatggatcaaa 31819061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 34934853 - 34934882
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  34934853 cactaagtggggtcggctacatggatcaaa 34934882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 130
Target Start/End: Complemental strand, 38869141 - 38869111
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaac 130  Q
    |||||||||||||||||||||||||||||||    
T  38869141 cactaagtggggtcggctacatggatcaaac 38869111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 42501311 - 42501237
Alignment:
Q  143 catatttctatcaaactcatcaatctct-gatctttcttaataattcctctcacagttttcctagttcttcctct 216  Q
    |||||||||||| ||||||| ||||| | ||||||||||||||||| |||| | |||||| |||| | |||||||    
T  42501311 catatttctatccaactcattaatctatagatctttcttaataatttctcttatagtttttctaggttttcctct 42501237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 1211004 - 1210975
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  1211004 cactaagtggggtcggctacatggatcaaa 1210975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 2544852 - 2544823
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  2544852 cactaagtggggtcggctacatggatcaaa 2544823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 4029381 - 4029352
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  4029381 cactaagtggggtcggctacatggatcaaa 4029352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 4318868 - 4318897
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  4318868 cactaagtggggtcggctacatggatcaaa 4318897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 4590555 - 4590584
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  4590555 cactaagtggggtcggctacatggatcaaa 4590584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 21769734 - 21769763
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  21769734 cactaagtggggtcggctacatggatcaaa 21769763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 22175404 - 22175375
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  22175404 cactaagtggggtcggctacatggatcaaa 22175375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 25979254 - 25979283
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  25979254 cactaagtggggtcggctacatggatcaaa 25979283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 26299327 - 26299298
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  26299327 cactaagtggggtcggctacatggatcaaa 26299298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 28090717 - 28090746
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28090717 cactaagtggggtcggctacatggatcaaa 28090746  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 28533726 - 28533697
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28533726 cactaagtggggtcggctacatggatcaaa 28533697  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 29577511 - 29577482
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  29577511 cactaagtggggtcggctacatggatcaaa 29577482  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 30202153 - 30202182
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  30202153 cactaagtggggtcggctacatggatcaaa 30202182  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 32082779 - 32082808
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  32082779 cactaagtggggtcggctacatggatcaaa 32082808  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 32404549 - 32404578
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  32404549 cactaagtggggtcggctacatggatcaaa 32404578  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 34705101 - 34705064
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaacaac 133  Q
    |||||||||||||||||||| || ||||||||||||||    
T  34705101 atctcactaagtggggtcggttatatggatcaaacaac 34705064  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 37311778 - 37311807
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  37311778 cactaagtggggtcggctacatggatcaaa 37311807  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 37462899 - 37462928
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  37462899 cactaagtggggtcggctacatggatcaaa 37462928  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 41165541 - 41165512
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  41165541 cactaagtggggtcggctacatggatcaaa 41165512  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 41560488 - 41560459
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  41560488 cactaagtggggtcggctacatggatcaaa 41560459  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 43481821 - 43481850
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  43481821 cactaagtggggtcggctacatggatcaaa 43481850  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 44941799 - 44941828
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  44941799 cactaagtggggtcggctacatggatcaaa 44941828  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 46423239 - 46423268
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  46423239 cactaagtggggtcggctacatggatcaaa 46423268  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 49347416 - 49347445
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  49347416 cactaagtggggtcggctacatggatcaaa 49347445  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 50257833 - 50257800
Alignment:
Q  96 atctcactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||| ||||||||||||||||    
T  50257833 atctcactaagtggggttggctacatggatcaaa 50257800  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 52561612 - 52561641
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  52561612 cactaagtggggtcggctacatggatcaaa 52561641  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 52921339 - 52921310
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  52921339 cactaagtggggtcggctacatggatcaaa 52921310  T

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Target: scaffold1318 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 590 - 561
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  590 cactaagtggggtcggctacatggatcaaa 561  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 28912 - 28941
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  28912 cactaagtggggtcggctacatggatcaaa 28941  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 31727 - 31698
Alignment:
Q  100 cactaagtggggtcggctacatggatcaaa 129  Q
    ||||||||||||||||||||||||||||||    
T  31727 cactaagtggggtcggctacatggatcaaa 31698  T

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Target: scaffold0113 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Original strand, 11573 - 11601
Alignment:
Q  101 actaagtggggtcggctacatggatcaaa 129  Q
    |||||||||||||||||||||||||||||    
T  11573 actaagtggggtcggctacatggatcaaa 11601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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