View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_high_13 (Length: 438)
Name: NF1293_high_13
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 37 - 427
Target Start/End: Complemental strand, 52580553 - 52580163
Alignment:
| Q |
37 |
ggtggaggtgttggtggtggattgatgaaacttcgaggtgatgtagaaatgtgcggttacagagatgtggagttgatgtggaacatgttaggcttaaacc |
136 |
Q |
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| T |
52580553 |
ggtggaggtgttggtggtggattgatgaaacttcgaggtgatgtagaaatgtgcggttacagagatgtggagttgatgtggaacatgttaggcttaaacc |
52580454 |
T |
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| Q |
137 |
tcaagcctgaggcagtggaaactccacgaagcactaagccaaaacttacaaggcgtagctgcaagcaaagattcaattctaagcttttcttttggactaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580453 |
tcaagcctgaggcagtggaaactccacgaagcactaagccaaaacttacaaggcgtagctgcaagcaaagattcaattctaagcttttcttttggactaa |
52580354 |
T |
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| Q |
237 |
ccaataataaacttgtgcctcaaatagtaaattttgaaagttttgtagtgggcacaatgtttattttgtacatgatgatataatcataatgaattttata |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580353 |
ccaataataaacttgtgcctcaaatagtaaattttgaaagttttgtagtgggcacaatgtttattttgtacatgatgatataatcataatgaattttata |
52580254 |
T |
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| Q |
337 |
aacttatgtaaatacaatttatacaagtaactgttaatttgtctctctatacattatacagataatcgaaagaaacgtcttcttgtttcat |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52580253 |
aacttatgtaaatacaatttatacaagtaactgttaatttgtctctctatacattatacagataatcgaaagaaacgtcttcttgtttcat |
52580163 |
T |
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