View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1293_high_23 (Length: 350)

Name: NF1293_high_23
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1293_high_23
NF1293_high_23
[»] chr3 (60 HSPs)
chr3 (11-277)||(4141957-4142223)
chr3 (16-277)||(4157769-4158033)
chr3 (8-277)||(3754565-3754837)
chr3 (173-277)||(3745973-3746074)
chr3 (168-239)||(2456249-2456320)
chr3 (183-275)||(803213-803302)
chr3 (183-241)||(2696727-2696785)
chr3 (174-277)||(2678385-2678485)
chr3 (161-241)||(989394-989474)
chr3 (164-236)||(9587161-9587233)
chr3 (175-241)||(968669-968735)
chr3 (171-241)||(1931137-1931207)
chr3 (177-239)||(2644351-2644413)
chr3 (177-239)||(2659141-2659203)
chr3 (175-229)||(2686299-2686353)
chr3 (180-241)||(1007459-1007520)
chr3 (180-241)||(1022487-1022548)
chr3 (190-239)||(13498224-13498273)
chr3 (183-239)||(2442039-2442095)
chr3 (162-237)||(2459277-2459352)
chr3 (171-238)||(2631358-2631425)
chr3 (164-239)||(7334215-7334290)
chr3 (174-241)||(7432040-7432107)
chr3 (171-241)||(1940562-1940632)
chr3 (162-239)||(956381-956458)
chr3 (188-241)||(1891064-1891117)
chr3 (172-237)||(23197014-23197079)
chr3 (171-239)||(2476634-2476702)
chr3 (171-239)||(7942485-7942553)
chr3 (188-239)||(771499-771550)
chr3 (164-239)||(783775-783850)
chr3 (188-239)||(7324431-7324482)
chr3 (188-239)||(37753345-37753396)
chr3 (188-239)||(43991960-43992011)
chr3 (180-242)||(1936972-1937034)
chr3 (177-239)||(2502148-2502210)
chr3 (190-240)||(9608346-9608396)
chr3 (179-229)||(44001605-44001655)
chr3 (192-237)||(997578-997623)
chr3 (192-237)||(1013968-1014013)
chr3 (164-236)||(14888588-14888660)
chr3 (188-239)||(754609-754660)
chr3 (188-239)||(1437996-1438046)
chr3 (188-238)||(2492083-2492133)
chr3 (185-239)||(12133097-12133151)
chr3 (187-237)||(23230981-23231031)
chr3 (190-239)||(9561987-9562036)
chr3 (186-238)||(768327-768379)
chr3 (171-227)||(13479590-13479646)
chr3 (188-227)||(746383-746422)
chr3 (188-239)||(7430536-7430587)
chr3 (188-239)||(9565829-9565880)
chr3 (174-229)||(37757722-37757777)
chr3 (187-237)||(7398178-7398228)
chr3 (188-238)||(7442977-7443027)
chr3 (187-237)||(23234865-23234915)
chr3 (188-229)||(7427605-7427646)
chr3 (103-135)||(2686227-2686259)
chr3 (186-238)||(9594622-9594674)
chr3 (189-229)||(12218037-12218077)
[»] chr5 (18 HSPs)
chr5 (11-277)||(11081775-11082047)
chr5 (180-241)||(23766854-23766915)
chr5 (180-241)||(23816702-23816763)
chr5 (171-241)||(23769629-23769699)
chr5 (171-241)||(23819477-23819547)
chr5 (176-241)||(23732165-23732230)
chr5 (189-241)||(3181715-3181767)
chr5 (171-241)||(23861009-23861079)
chr5 (190-239)||(20292995-20293044)
chr5 (171-241)||(23764243-23764313)
chr5 (171-241)||(23814076-23814146)
chr5 (190-239)||(20301443-20301492)
chr5 (190-239)||(20305856-20305905)
chr5 (190-239)||(20310260-20310309)
chr5 (174-241)||(1427679-1427746)
chr5 (189-239)||(6401767-6401817)
chr5 (187-241)||(41973469-41973523)
chr5 (98-138)||(1427603-1427643)
[»] scaffold0044 (1 HSPs)
scaffold0044 (171-240)||(89142-89211)
[»] chr1 (16 HSPs)
chr1 (171-240)||(51381438-51381507)
chr1 (198-240)||(23896147-23896189)
chr1 (190-239)||(24629213-24629262)
chr1 (189-241)||(24513054-24513106)
chr1 (197-240)||(24246506-24246549)
chr1 (189-240)||(25478864-25478915)
chr1 (190-240)||(24242859-24242909)
chr1 (200-241)||(24634817-24634858)
chr1 (187-240)||(51858605-51858658)
chr1 (190-242)||(51782796-51782848)
chr1 (189-239)||(24626773-24626823)
chr1 (187-229)||(51407558-51407600)
chr1 (186-227)||(25609375-25609416)
chr1 (189-242)||(25610967-25611020)
chr1 (187-240)||(51756749-51756802)
chr1 (187-240)||(51854946-51854999)
[»] chr4 (5 HSPs)
chr4 (171-236)||(22672110-22672175)
chr4 (162-241)||(20019746-20019825)
chr4 (178-233)||(55419788-55419843)
chr4 (189-239)||(11032910-11032960)
chr4 (183-227)||(20016180-20016224)
[»] chr2 (12 HSPs)
chr2 (187-239)||(36577366-36577418)
chr2 (164-239)||(7160730-7160805)
chr2 (165-236)||(7168667-7168738)
chr2 (165-239)||(7156169-7156243)
chr2 (171-239)||(7174356-7174424)
chr2 (185-230)||(6538843-6538888)
chr2 (171-240)||(33038159-33038228)
chr2 (172-239)||(11237693-11237760)
chr2 (171-238)||(33020314-33020381)
chr2 (188-239)||(33026657-33026708)
chr2 (166-229)||(34560895-34560958)
chr2 (183-227)||(20538030-20538074)
[»] scaffold0015 (2 HSPs)
scaffold0015 (189-240)||(32330-32381)
scaffold0015 (189-240)||(40382-40433)
[»] chr7 (5 HSPs)
chr7 (189-240)||(1421170-1421221)
chr7 (162-239)||(1078134-1078211)
chr7 (171-240)||(39298976-39299045)
chr7 (186-235)||(3927063-3927112)
chr7 (188-229)||(27755733-27755774)
[»] chr8 (1 HSPs)
chr8 (172-241)||(19727879-19727948)
[»] chr6 (15 HSPs)
chr6 (179-238)||(24417477-24417536)
chr6 (171-237)||(19119065-19119131)
chr6 (171-237)||(19126359-19126425)
chr6 (178-235)||(176338-176395)
chr6 (190-235)||(9819831-9819876)
chr6 (180-236)||(370777-370833)
chr6 (178-229)||(1442098-1442149)
chr6 (190-235)||(9703888-9703933)
chr6 (190-235)||(9825517-9825562)
chr6 (187-240)||(17368365-17368418)
chr6 (185-235)||(7564748-7564798)
chr6 (187-240)||(4183000-4183053)
chr6 (187-240)||(4743844-4743897)
chr6 (187-235)||(1459540-1459588)
chr6 (187-235)||(1470922-1470970)
[»] scaffold0200 (1 HSPs)
scaffold0200 (187-241)||(777-831)
[»] scaffold1004 (1 HSPs)
scaffold1004 (191-238)||(2144-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (191-238)||(4639-4686)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 60)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 4141957 - 4142223
Alignment:
Q  11 cacagacttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaaattcaagtcaaaatcatacttcagcaacac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4141957 cacagacttcaggaattcgtttaaaattagtagccttgaaagtacccctcctgggattgtaaagaatcaaattcaagtcaaaatcatacttcagcaacac 4142056  T
Q  111 ttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaaggaatagtgaacaatttagtccaagactcttta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142057 ttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaaggaatagtgaacaatttagtccaagactcttta 4142156  T
Q  211 tttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctcaaaa 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142157 tttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctcaaaa 4142223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 4157769 - 4158033
Alignment:
Q  16 acttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaaattcaagtcaaaatcatac---ttcagcaacactt 112  Q
    |||||||||||| ||||||||||||||||||| ||||| ||  ||||||| |||||||| | ||||||||||||| ||||||||   | |||||||||||    
T  4157769 acttcaggaattagtttaaaattagtagccttcaaagtgccgctcctggggttgtaaaggaccaaattcaagtcagaatcatacaactccagcaacactt 4157868  T
Q  113 gatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatt 212  Q
    |||||||||||||||||||||||||| |||||    |||||  ||||||||||| |||| ||||||  ||||||||||||||||||||||||||||||||    
T  4157869 gatcatcctcaaaaacatatattgccttggcaaaagccttaaatttagaaggatgtctcttgtaagagatagtgaacaatttagtccaagactctttatt 4157968  T
Q  213 tccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctcaaaa 277  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  4157969 tccatattccttcataagccaaacatcataaccagaagtggtcacgcacaagcaatccctcaaaa 4158033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 3754837 - 3754565
Alignment:
Q  8 caccacagacttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaaattcaagtcaaaatcat------actt 101  Q
    ||||||||||||| ||| |   |||||| ||| ||||||| || |||||  ||||||| |||||||||| |||||||||||||| |||||      ||||    
T  3754837 caccacagacttctggagtatatttaaagttaatagccttcaaggtaccgctcctggggttgtaaagaaccaaattcaagtcaatatcattcataaactt 3754738  T
Q  102 cagcaacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaaggaatagtgaacaatttagtccaa 201  Q
    |||||||||||||||||||||||||  ||| | |||| | |||  |||||  ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  3754737 cagcaacacttgatcatcctcaaaagtatacaatgccttcgcaaagacctcgggtttagaaggatctctcatgcaaggaatagtaaacaatttagtccaa 3754638  T
Q  202 gactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctcaaaa 277  Q
    |||||||||||||||||||||||||||| ||||||||||   ||||||   |||||||||||||||||||||||||    
T  3754637 gactctttatttccatattccttcataacccaaacatcaacaccagaa---gtcacgcacaagcaatccctcaaaa 3754565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 3746074 - 3745973
Alignment:
Q  173 tgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccct 272  Q
    ||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||| ||||| |||||  ||||||   ||||||||||||||||||||    
T  3746074 tgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa---gtcacgcacaagcaatccct 3745978  T
Q  273 caaaa 277  Q
     ||||    
T  3745977 taaaa 3745973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 2456320 - 2456249
Alignment:
Q  168 tctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  2456320 tctcatgtaaggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 803213 - 803302
Alignment:
Q  183 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctcaa 275  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||  ||||||    ||| ||||||||||||||||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaa---atcatgcacaagcaatccctcaa 803302  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 2696727 - 2696785
Alignment:
Q  183 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcat 2696785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 2678385 - 2678485
Alignment:
Q  174 gtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctc 273  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||  ||||||| |||||||||||  ||| ||   |||| ||||||||||||| ||    
T  2678385 gtaaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcaccacaa---gtcaagcacaagcaatccttc 2678481  T
Q  274 aaaa 277  Q
    ||||    
T  2678482 aaaa 2678485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 989474 - 989394
Alignment:
Q  161 aaggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||||| || || ||||| | |||||||||||    
T  989474 aaggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcat 989394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 9587161 - 9587233
Alignment:
Q  164 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 236  Q
    |||||| ||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  9587161 gatctcccatgtaaggaatattgtacaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 968735 - 968669
Alignment:
Q  175 taaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||    
T  968735 taagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatcat 968669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 1931137 - 1931207
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||||||| ||||||||||||||||||||| || ||||||||||||| |||| |||||| |||||||||||    
T  1931137 catgtaagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatcat 1931207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 2644351 - 2644413
Alignment:
Q  177 aggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  2644351 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 2659141 - 2659203
Alignment:
Q  177 aggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  2659141 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 2686299 - 2686353
Alignment:
Q  175 taaggaatagtgaacaatttagtccaagactctttatttccatattccttcataa 229  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  2686299 taaggaatagtgaacaatttattccaagactctttttttccatattccttcataa 2686353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 1007520 - 1007459
Alignment:
Q  180 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||    
T  1007520 aatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcat 1007459  T

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Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 1022548 - 1022487
Alignment:
Q  180 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||    
T  1022548 aatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcat 1022487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 2442095 - 2442039
Alignment:
Q  183 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 2459352 - 2459277
Alignment:
Q  162 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaaca 237  Q
    |||||||  |||||||| ||  || |||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  2459352 aggatctggcatgtaagaaacggtaaacaattttgtccaagactctttatttccatattccttcataatccaaaca 2459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 2631425 - 2631358
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacat 238  Q
    ||||| ||||| | || ||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2631425 catgtcaggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 7334215 - 7334290
Alignment:
Q  164 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||| ||| || |||||||||| |||||||||||||||||||||||||||| || |||||||| | |||||||||    
T  7334215 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 7432040 - 7432107
Alignment:
Q  174 gtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||  |||||||||||    
T  7432040 gtaagaaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcat 7432107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 1940562 - 1940632
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||| ||| ||||||||||||||||||||| || |||| |||||||| ||||||||||| |||||||||||    
T  1940562 catgcaagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcat 1940632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 956458 - 956381
Alignment:
Q  162 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||  ||||| || |||| |||||||||||  |||||||||||| ||||||||||||||||||| |||||||||    
T  956458 aggatcttgcatgtgagaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 1891064 - 1891117
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatcat 1891117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 23197079 - 23197014
Alignment:
Q  172 atgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaaca 237  Q
    ||||||||||||   ||||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  23197079 atgtaaggaatacgaaacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 2476702 - 2476634
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||||||| |  ||||||| |||||||||    
T  2476702 catgttaggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 2476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 7942553 - 7942485
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||| | || |||||||| |||||||||||||||| ||||| |||||||||| |||||||||    
T  7942553 catgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 771499 - 771550
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 783775 - 783850
Alignment:
Q  164 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||| ||||||||||| |||  ||||||||||||| | || | ||||||||||||||||||||| |||||||||    
T  783775 gatctcccatgtaaggaacagtatacaatttagtccatggctttgtatttccatattccttcataatccaaacatc 783850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 7324431 - 7324482
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||||||||||||||||||||||| || |||||||||| |||||||||    
T  7324431 acaatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 37753345 - 37753396
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 43992011 - 43991960
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  43992011 acaatttggtccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 1936972 - 1937034
Alignment:
Q  180 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcata 242  Q
    ||||||||||||||||| ||| || |||||||||  |||||||||||||| ||||||||||||    
T  1936972 aatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcata 1937034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 2502210 - 2502148
Alignment:
Q  177 aggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||||| ||| |||||||||| |||| ||||||||||| |||||||||| |||||||||    
T  2502210 aggaatagtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatc 2502148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 9608346 - 9608396
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    |||||||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatca 9608396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 44001655 - 44001605
Alignment:
Q  179 gaatagtgaacaatttagtccaagactctttatttccatattccttcataa 229  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  44001655 gaatagtgtacagtttagtccaagactctttaattccatattccttcataa 44001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 997623 - 997578
Alignment:
Q  192 tttagtccaagactctttatttccatattccttcataagccaaaca 237  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaaca 997578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 1014013 - 1013968
Alignment:
Q  192 tttagtccaagactctttatttccatattccttcataagccaaaca 237  Q
    |||||||||||||||||||||||||||||||||||| | |||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaaca 1013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 14888588 - 14888660
Alignment:
Q  164 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 236  Q
    |||||| |||||||| |||| || ||||||||||| ||| |||||||||| ||||||| ||||||| ||||||    
T  14888588 gatctcccatgtaagtaatattgtacaatttagtctaaggctctttattttcatattcattcataatccaaac 14888660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 754609 - 754660
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||||||||||||| || |||||| |||||||||| |||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaacatc 754660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 1438046 - 1437996
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  1438046 acaatttaatccaagagtctttatttccatattccttcataa-ccaaacatc 1437996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 2492133 - 2492083
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacat 238  Q
    ||||||||||||||||||||  ||||||||| |||||||||| ||||||||    
T  2492133 acaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 12133151 - 12133097
Alignment:
Q  185 tgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||||||||||| |||||| |||||||||| ||| |||||| |||||||||    
T  12133151 tgaacaatttagtccacgactctctatttccatactccctcataacccaaacatc 12133097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 23230981 - 23231031
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaaca 237  Q
    ||||||||| |||||||||||| |||||||||||| ||||| |||||||||    
T  23230981 aacaatttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 9561987 - 9562036
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||||||||||| ||||||||| || ||||||| |||||||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaacatc 9562036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 768327 - 768379
Alignment:
Q  186 gaacaatttagtccaagactctttatttccatattccttcataagccaaacat 238  Q
    ||||||||||||||||||||||| |||||| || || ||||||| ||||||||    
T  768327 gaacaatttagtccaagactcttcatttccgtactcattcataatccaaacat 768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 13479646 - 13479590
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcat 227  Q
    ||||| || ||||||||||||||| ||||||||||||| | |||||||||| |||||    
T  13479646 catgttagaaatagtgaacaattttgtccaagactcttgaattccatattctttcat 13479590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 746383 - 746422
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcat 227  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  746383 acaatttagtccaagactcttgatttccatactccttcat 746422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 7430536 - 7430587
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||| |||||| |||||||||||| | |||||||| |||||||||    
T  7430536 acaatttagtctaagactttttatttccatacttcttcataatccaaacatc 7430587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 9565829 - 9565880
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||||||||||||| || ||| || |||||||||| |||||||||    
T  9565829 acaatttagtccaagactcttgatctccgtactccttcataatccaaacatc 9565880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 37757722 - 37757777
Alignment:
Q  174 gtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataa 229  Q
    |||||||| | || |||| || |||||||||||||| |||||||||||||||||||    
T  37757722 gtaaggaacactgtacaacttcgtccaagactctttgtttccatattccttcataa 37757777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 7398178 - 7398228
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaaca 237  Q
    ||||||||| |||||||||||| ||||||||| |||||||| | |||||||    
T  7398178 aacaatttaatccaagactcttcatttccatactccttcatcaaccaaaca 7398228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 7442977 - 7443027
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacat 238  Q
    |||| |||||||||||||||| ||||||||| |||||||| | ||||||||    
T  7442977 acaacttagtccaagactcttgatttccatactccttcatgatccaaacat 7443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 23234865 - 23234915
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaaca 237  Q
    |||||||||||||||||||||   ||||||||||| ||||| |||||||||    
T  23234865 aacaatttagtccaagactctacgtttccatattctttcatcagccaaaca 23234915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 7427605 - 7427646
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataa 229  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||    
T  7427605 acaatttagcccacgactctttatttccatattccatcataa 7427646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 2686227 - 2686259
Alignment:
Q  103 agcaacacttgatcatcctcaaaaacatatatt 135  Q
    |||| ||||||||||||||||||||||||||||    
T  2686227 agcagcacttgatcatcctcaaaaacatatatt 2686259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 9594622 - 9594674
Alignment:
Q  186 gaacaatttagtccaagactctttatttccatattccttcataagccaaacat 238  Q
    ||||||||||||||||||||||| |||||| || |  ||||||| ||||||||    
T  9594622 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 9594674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 12218077 - 12218037
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataa 229  Q
    |||||||| ||| ||||||||||||||||||||| ||||||    
T  12218077 caatttagcccacgactctttatttccatattccatcataa 12218037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 11082047 - 11081775
Alignment:
Q  11 cacagacttcaggaattcgtttaaaattagtagccttgaaagtacccgtcctgggattgtaaagaatcaaattcaagtcaaaatcat------acttcag 104  Q
    |||||||||| |||||   |||||||||| ||||||| |||||||   |||| ||||||||||||||||||||||||||||||||||      ||||||     
T  11082047 cacagacttctggaatatctttaaaattattagccttcaaagtacggctcctaggattgtaaagaatcaaattcaagtcaaaatcattcataaacttcaa 11081948  T
Q  105 caacacttgatcatcctcaaaaacatatattgccctggcatcgaccttaggtttagaaggatctctcatgtaaggaatagtgaacaatttagtccaagac 204  Q
    ||||||||||||||||||||| | ||||| |||| ||| |  ||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11081947 caacacttgatcatcctcaaatatatatactgccttgggaaagacatcacgtttagaaggatctctcatgtaaggaatagtaaacaatttagtccaagac 11081848  T
Q  205 tctttatttccatattccttcataagccaaacatcatagccagaagtcgtcacgcacaagcaatccctcaaaa 277  Q
    |||||||||||||| |||||||||| |||||||||||  | || ||||||||| |||||||||||||||||||    
T  11081847 tctttatttccatactccttcataacccaaacatcatcactagtagtcgtcacacacaagcaatccctcaaaa 11081775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 23766854 - 23766915
Alignment:
Q  180 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcat 23766915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 23816702 - 23816763
Alignment:
Q  180 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcat 23816763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 23769629 - 23769699
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||    
T  23769629 catgaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23769699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 23819477 - 23819547
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||    
T  23819477 catgaaaggtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcat 23819547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 23732230 - 23732165
Alignment:
Q  176 aaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||||||||||||| |||| |||||||| ||||||| |||||||||||||||| |||||||||||    
T  23732230 aaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcat 23732165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 3181767 - 3181715
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatcat 3181715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 23861009 - 23861079
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||| ||||||||||||||||||||||||||||| ||||  | |||||||||||||| | |||||||||||    
T  23861009 catgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat 23861079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 23764243 - 23764313
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||| ||||||||||||||||| ||||||||||| ||||  | |||||||||||||| | |||||||||||    
T  23764243 catgaaaggaatagtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatcat 23764313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 23814076 - 23814146
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||| ||||||||||||||||||||||||||||| || |  | |||||||||||||| | |||||||||||    
T  23814076 catgaaaggaatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatcat 23814146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||||||||||||| || ||||||||||||||| |||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 20305905 - 20305856
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatc 20305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 20310309 - 20310260
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatc 20310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 1427679 - 1427746
Alignment:
Q  174 gtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||| ||| ||||||| |||| ||||||||||| |||||||||| || ||||||| |||||||||||    
T  1427679 gtaagaaattgtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatcat 1427746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 6401767 - 6401817
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||||||| |||||| ||||| || ||||||||||||||||||||||    
T  6401767 caatttagtccatgactctctattttcaaattccttcataagccaaacatc 6401817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 41973469 - 41973523
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||| ||||||||| ||| |||||||| ||||||||||||||| |||||||||||    
T  41973469 aacagtttagtccatgacactttattttcatattccttcataacccaaacatcat 41973523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 1427603 - 1427643
Alignment:
Q  98 acttcagcaacacttgatcatcctcaaaaacatatattgcc 138  Q
    ||||||||| |||||||||||||||||| | ||||||||||    
T  1427603 acttcagcagcacttgatcatcctcaaagatatatattgcc 1427643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 89211 - 89142
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  89211 catgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 51381438 - 51381507
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||    
T  51381438 catgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 23896147 - 23896189
Alignment:
Q  198 ccaagactctttatttccatattccttcataagccaaacatca 240  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaacatca 23896189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 24629213 - 24629262
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  24629213 aatttaatccaagactctttatttccgtattccttcataagccaaacatc 24629262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 24513106 - 24513054
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||||| |||| ||||||||| |||||||||| |||||||||||||||||||    
T  24513106 caatttaatccatgactctttacttccatattctttcataagccaaacatcat 24513054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 24246506 - 24246549
Alignment:
Q  197 tccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  24246506 tccaagactctttatttccgtattctttcataagccaaacatca 24246549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 25478915 - 25478864
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||| ||||||| |||||||| || ||||||||||||||||||||||||    
T  25478915 caatttaatccaagattctttattaccgtattccttcataagccaaacatca 25478864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 24242859 - 24242909
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    |||||| ||||||||||||||||||| |||  |||||||||||||||||||    
T  24242859 aatttaatccaagactctttatttccgtatatcttcataagccaaacatca 24242909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 24634817 - 24634858
Alignment:
Q  200 aagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  24634817 aagactctttaattccgtattccttcataagccaaacatcat 24634858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 51858658 - 51858605
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||||||||||||| |||  |||||||||||||||||| | ||||||||||    
T  51858658 aacaatttagtccaagattctacatttccatattccttcatgatccaaacatca 51858605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 51782848 - 51782796
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaacatcata 242  Q
    |||||| ||||||| | || |||||||||||||||||||| ||||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacatcata 51782796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 24626773 - 24626823
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||  ||||||||||||| |||  |||||||||||||||||||||||    
T  24626773 caatttaacccaagactctttaattctgtattccttcataagccaaacatc 24626823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 51407558 - 51407600
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataa 229  Q
    ||||||||||||||||||| || ||| ||||||||||||||||    
T  51407558 aacaatttagtccaagactgttcattcccatattccttcataa 51407600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 25609375 - 25609416
Alignment:
Q  186 gaacaatttagtccaagactctttatttccatattccttcat 227  Q
    ||||||||||||||||||||||| | || |||||||||||||    
T  25609375 gaacaatttagtccaagactcttgaatttcatattccttcat 25609416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 25610967 - 25611020
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataagccaaacatcata 242  Q
    |||||||  |||||| ||||||||||| |||||| |||| ||||||||||||||    
T  25610967 caatttaacccaagattctttatttccgtattccgtcattagccaaacatcata 25611020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 51756749 - 51756802
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||||||||||||| | |  |||||||||||||||||| | ||||||||||    
T  51756749 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 51756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 51854999 - 51854946
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||||||||||||| |||  |||||||||||| ||||| | ||||||||||    
T  51854999 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 51854946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 22672110 - 22672175
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 236  Q
    |||||||| |||||||||||||||||||||||| || |||||||||||||||||||| | ||||||    
T  22672110 catgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaac 22672175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 20019746 - 20019825
Alignment:
Q  162 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||||||  ||||| || || |||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||    
T  20019746 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 20019825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 55419843 - 55419788
Alignment:
Q  178 ggaatagtgaacaatttagtccaagactctttatttccatattccttcataagcca 233  Q
    |||||||| ||||||||||||||||| ||||||||||||||  |||||||||||||    
T  55419843 ggaatagtaaacaatttagtccaagaatctttatttccataaaccttcataagcca 55419788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 11032960 - 11032910
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  11032960 caatttaatccaagactctttatttccgtattccttcatgagccaaacatc 11032910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 20016180 - 20016224
Alignment:
Q  183 agtgaacaatttagtccaagactctttatttccatattccttcat 227  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  20016180 agtgaacaatttagtccaagactcttgaattccatattccttcat 20016224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 36577418 - 36577366
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 7160730 - 7160805
Alignment:
Q  164 gatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||| |||||| ||||| |  |||||||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  7160730 gatctttcatgtgaggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 7168667 - 7168738
Alignment:
Q  165 atctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 236  Q
    ||||| |||||||||||    |||||||||||||||||| || |||||||||||||||||||||||||||||    
T  7168667 atctcccatgtaaggaactcggaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 7156169 - 7156243
Alignment:
Q  165 atctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||| ||||||||||| |  ||||||||||| |||||| |||| ||||||||| ||||||||||||||||||||    
T  7156169 atctcccatgtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 7174356 - 7174424
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||||||||| |  ||||||| |||||||||| |||| |||||||||||||||||||||||| |||||    
T  7174356 catgtaaggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagccagacatc 7174424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 6538888 - 6538843
Alignment:
Q  185 tgaacaatttagtccaagactctttatttccatattccttcataag 230  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccatactccttcataag 6538843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 33038228 - 33038159
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||||||| |  | ||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  33038228 catgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcataatccaaacatca 33038159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 11237760 - 11237693
Alignment:
Q  172 atgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||||| |  |||||||||||||||||  ||| |||||||||| |||| |||||||||||||||    
T  11237760 atgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 11237693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 33020381 - 33020314
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacat 238  Q
    ||||||||||| |  | ||||| |||||||||||| ||||||||||||||||||||||| ||| ||||    
T  33020381 catgtaaggaacacggtacaatctagtccaagactttttatttccatattccttcataatccacacat 33020314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 33026708 - 33026657
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    ||||| |||||||||||| |||||||||||||| |||||||| |||||||||    
T  33026708 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 33026657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 34560895 - 34560958
Alignment:
Q  166 tctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataa 229  Q
    |||||||||| ||||| | |  |||||||||||||||| | ||||||||||||||| |||||||    
T  34560895 tctctcatgttaggaacactatacaatttagtccaagattttttatttccatattctttcataa 34560958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 20538074 - 20538030
Alignment:
Q  183 agtgaacaatttagtccaagactctttatttccatattccttcat 227  Q
    ||||||||||||||||||||| |||| | |||||||||| |||||    
T  20538074 agtgaacaatttagtccaagattcttaaattccatattcattcat 20538030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 32330 - 32381
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 32381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 40382 - 40433
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  40382 caatttaatccaagagtctttattttcatattccttcataagccaaacatca 40433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 1421170 - 1421221
Alignment:
Q  189 caatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  1421170 caatttaatccaagactctttatttccgtattccttcataagccaaacatca 1421221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 1078134 - 1078211
Alignment:
Q  162 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 239  Q
    |||||||| | |||||| || | |||||||||||||||| |||||| |||||||||| |||||||||| |||||||||    
T  1078134 aggatctcccctgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 39299045 - 39298976
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||||||| | || | ||||||||||| ||||||||||||||| ||||||||| || ||||||||||    
T  39299045 catgtaaggaacactgtaaaatttagtccaggactctttatttccacattccttcaaaacccaaacatca 39298976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 3927112 - 3927063
Alignment:
Q  186 gaacaatttagtccaagactctttatttccatattccttcataagccaaa 235  Q
    |||||||||||||||||| | |||||||||||| |||||||||| |||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 27755774 - 27755733
Alignment:
Q  188 acaatttagtccaagactctttatttccatattccttcataa 229  Q
    ||||||||||| | ||||||||||||| ||||||||||||||    
T  27755774 acaatttagtctatgactctttatttctatattccttcataa 27755733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 19727948 - 19727879
Alignment:
Q  172 atgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    ||||||| ||||||||||| ||||||||| |||||||||||| |||||||  |||||| |||||||||||    
T  19727948 atgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcat 19727879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 24417477 - 24417536
Alignment:
Q  179 gaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacat 238  Q
    ||||| || |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  24417477 gaatactgtacaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 19119131 - 19119065
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaaca 237  Q
    ||||||||||| |   |||||||||||||||||||||| |||||||||||||||||| | |||||||    
T  19119131 catgtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 19126425 - 19126359
Alignment:
Q  171 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaaca 237  Q
    ||||||||||| |   |||||||||||||||||||||| |||||||||||||||||| | |||||||    
T  19126425 catgtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 176395 - 176338
Alignment:
Q  178 ggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaa 235  Q
    |||| ||||||||||||||||||||| |||||||||||||| || |||||| ||||||    
T  176395 ggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaa 176338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 9819831 - 9819876
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaa 235  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 370777 - 370833
Alignment:
Q  180 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaac 236  Q
    |||| ||||||||||||||||||| |||||||||||||| | |||||||| ||||||    
T  370777 aatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 1442098 - 1442149
Alignment:
Q  178 ggaatagtgaacaatttagtccaagactctttatttccatattccttcataa 229  Q
    |||| ||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  1442098 ggaacagtgaacaatttagtccaagaatctttaattccataatccttcataa 1442149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 9703888 - 9703933
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaa 235  Q
    |||||||||||| | ||| |||||||||||||||||||||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaa 9703933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 9825517 - 9825562
Alignment:
Q  190 aatttagtccaagactctttatttccatattccttcataagccaaa 235  Q
    |||||||||||||| | | |||||||||||||||||||||||||||    
T  9825517 aatttagtccaagagtttctatttccatattccttcataagccaaa 9825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 17368418 - 17368365
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    |||||||||||||||||| ||| ||||||||| || ||||| ||||||||||||    
T  17368418 aacaatttagtccaagacccttcatttccatactctttcatcagccaaacatca 17368365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 7564748 - 7564798
Alignment:
Q  185 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 235  Q
    ||||||||||||||||||| || || |||||||| |||||||||| |||||    
T  7564748 tgaacaatttagtccaagaatccttgtttccataatccttcataacccaaa 7564798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 4183000 - 4183053
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||||||||||||| | |  |||||||||||||||||| | ||||||||||    
T  4183000 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 4183053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 4743844 - 4743897
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaacatca 240  Q
    ||||||||||||||||| | |  |||||||||||||||||| | ||||||||||    
T  4743844 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 4743897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 1459540 - 1459588
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaa 235  Q
    ||||||||||||||||| |||||||||||| | || ||||||| |||||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaa 1459588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 1470922 - 1470970
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaa 235  Q
    |||||||||| |||||| |||||||||||||| || ||||||| |||||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaa 1470970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 777 - 831
Alignment:
Q  187 aacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 241  Q
    |||| ||||||||| ||| |||||||| ||||||||||||||| |||||||||||    
T  777 aacagtttagtccatgacactttattttcatattccttcataacccaaacatcat 831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 2191 - 2144
Alignment:
Q  191 atttagtccaagactctttatttccatattccttcataagccaaacat 238  Q
    |||||||||||||||||  |||||||||||||||||||  ||||||||    
T  2191 atttagtccaagactctacatttccatattccttcatagcccaaacat 2144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 4686 - 4639
Alignment:
Q  191 atttagtccaagactctttatttccatattccttcataagccaaacat 238  Q
    |||||||||||||||||  |||||||||||||||||||  ||||||||    
T  4686 atttagtccaagactctacatttccatattccttcatagcccaaacat 4639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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