View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1293_high_28 (Length: 327)
Name: NF1293_high_28
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_high_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 5725561 - 5725841
Alignment:
| Q |
11 |
tatgaaaaggctggtgagatgttgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgatactaaaagaatatgagc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5725561 |
tatgaaaaggctggtgagatgttgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgatactaaaagaatatgagc |
5725660 |
T |
|
| Q |
111 |
agatacccatttataaagagacaactgaaaagtgtagaagaattgtaatgtttatttattcaagtgattctctcatttctctattgcagcactttgccaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5725661 |
agatacccatttataaagagacaactgaaaagtgtagaagaattgtaatgtttatttattcaagtgattctctcatttctctattgcagcactttgccaa |
5725760 |
T |
|
| Q |
211 |
aggagtaaatttgtttgggatgg-aactgttatctgtgtcttatattgcttatctttatgctgtcttcatgagaacagaga |
290 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5725761 |
aggagtaaatttgtttgggatggaaactgttatctgtgtcttatattgcttatctttatgctgtcttcatgagaacagaga |
5725841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 4414584 - 4414769
Alignment:
| Q |
20 |
gctggtgagatgttgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgatactaaaagaatatgagcagataccca |
119 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |||||| ||||||||| |
|
|
| T |
4414584 |
gctggtgagatgtagatggtgaaaaggactaggttgtattggacaccttgtgcaacacacacaattgagatgatattggaagactatgagaagataccca |
4414683 |
T |
|
| Q |
120 |
tttataaagagacaactgaaaagtgtagaagaattgtaatgtttatttattcaagtgattctctcatttctc-tattgcagcactt |
204 |
Q |
| |
|
|| || ||||||||| | |||| || ||||||| || |||||| ||||||| | |||||||||| ||| | ||||||||||| |
|
|
| T |
4414684 |
ttcatgaagagacaattacaaaggctaaaagaattttagcctttattcattcaagggcttctctcattcctcgtgttgcagcactt |
4414769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 4377287 - 4377214
Alignment:
| Q |
20 |
gctggtgagatgttgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgat |
93 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
4377287 |
gctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtgcgacacactgcattgagatgat |
4377214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 4384860 - 4384791
Alignment:
| Q |
20 |
gctggtgagatgttgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgaga |
89 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
4384860 |
gctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtgcgacacactgcattgaga |
4384791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 4389970 - 4389791
Alignment:
| Q |
20 |
gctggtgagatgttgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgatactaaaagaatatgagcag---atac |
116 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| |||||||||||||| | |||| || ||| || |||| |
|
|
| T |
4389970 |
gctggtgagatgttgatggagaagaggactaggttgtattggacaccttgtg--acacactgcattgagatgatgttggaagattacgagaagaaaatac |
4389873 |
T |
|
| Q |
117 |
ccatttataaagagacaactgaaaagtgtagaagaattgtaatgtttatttattcaagtgattctctcatttctctattgca |
198 |
Q |
| |
|
| ||||| |||||| || | |||| ||| || |||| || ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4389872 |
ctgtttatgaagagataattacaaagggtaaaaaaattacaagttttatttattcgagggattctctcatttctctattgca |
4389791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 4370129 - 4370058
Alignment:
| Q |
22 |
tggtgagatgttgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattgagatgat |
93 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
4370129 |
tggtgagatgttgatggagaaaagaactaggctgtattggaccccttgtgcaacaaattgcattcagatgat |
4370058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 4360327 - 4360269
Alignment:
| Q |
28 |
gatgttgatgaagaaaaggactaggttgtattggacaccttgtgcaacacggtgcattg |
86 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
4360327 |
gatgttgatggcgaaaaggactaggctgtattggacaccttgcgcaacacattgcattg |
4360269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 4365711 - 4365675
Alignment:
| Q |
40 |
gaaaaggactaggttgtattggacaccttgtgcaaca |
76 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
4365711 |
gaaaaggactaggctgtattggaccccttgtgcaaca |
4365675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University