View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_high_4 (Length: 675)
Name: NF1293_high_4
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 285 - 525
Target Start/End: Complemental strand, 3331906 - 3331666
Alignment:
| Q |
285 |
ttcagcaacaacaacaacagcttttaggagattcaactgctccactttttcaagctatgcctcctcctaattctaatcctaatcttaatcctaatcttct |
384 |
Q |
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| T |
3331906 |
ttcagcaacaacaacaacagcttttaggagattcaactgctccactttttcaagctatgcatcctcctaattctaatcctaatcttaatcctaatcttct |
3331807 |
T |
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| Q |
385 |
cggtcagatgccttctgataatttctggccaaccgggcgttctccgtattgatcatgatgatattattgcaaagctatcattgttgggaacaaatgttgc |
484 |
Q |
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| T |
3331806 |
cggtcagatgccttctgataatttctggccaaccgggcgttctccgtattgatcatgatgacattattgcaaagctatcattgttgggaacaaatgttgc |
3331707 |
T |
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| Q |
485 |
aagaaggaaggaattggaagctagggaattcgatgatgagg |
525 |
Q |
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| T |
3331706 |
aagaaggaaggaattggaagctagggaattcgatgatgagg |
3331666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 3332170 - 3331950
Alignment:
| Q |
30 |
tttcgctggctggatcgtttcttccaccacctgctccgcccgctgcttctggtttgaccatatatttagcgggcggacaagggcaggttgttggtggaag |
129 |
Q |
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| T |
3332170 |
tttcgctggctggatcgtttcttccaccacctgctccgcccgctgcttctggtttgaccatatatttagcgggcggacaagggcaggttgttggtggaag |
3332071 |
T |
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| Q |
130 |
tgttgttggtgctttgattgcttctggacctgttgttattatgtctgcttcttttagtaacgctgcttatgagagacttcctttggaagaagatgatggt |
229 |
Q |
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| T |
3332070 |
tgttgttggtgctttgattgcttctggacctgttgttattatgtctgcttcttttagtaacgctgcttatgagagacttcctttggaagatgatgatggt |
3331971 |
T |
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| Q |
230 |
tcttctattcaacaacttcaa |
250 |
Q |
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| T |
3331970 |
tcttctattcaacaacttcaa |
3331950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 597 - 669
Target Start/End: Complemental strand, 3331594 - 3331522
Alignment:
| Q |
597 |
ggttctaggtgagttgatgtatgttgaatttgagactgtaattaaattgatgtatccttattagtattatcta |
669 |
Q |
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| T |
3331594 |
ggttctaggtgagttgatgtatgctgaatttgagactgtaattaaattgatgtatccttattattattatcta |
3331522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 39959944 - 39960017
Alignment:
| Q |
92 |
tatttagcgggcggacaagggcaggttgttggtggaagtgttgttggtgctttgattgcttctggacctgttgt |
165 |
Q |
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| T |
39959944 |
tatttagcgggtgctcaaggacaagttgttggaggtgctgtagttggtgctttgattgcttcaggacctgttgt |
39960017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 16578946 - 16579014
Alignment:
| Q |
95 |
ttagcgggcggacaagggcaggttgttggtggaagtgttgttggtgctttgattgcttctggacctgtt |
163 |
Q |
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| T |
16578946 |
ttagccggtggacaagggcaagttgttggtggaagtgttgttggacctttgattgctgctggacctgtt |
16579014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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