View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_high_42 (Length: 249)
Name: NF1293_high_42
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_high_42 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 30436580 - 30436357
Alignment:
| Q |
28 |
aaatgtttgtgattcgtcacacttatcggctcctgattctctttttaccgaacatcctgcagcttcagactctatcttgtggaaatctggcaataaccaa |
127 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30436580 |
aaatgtttgtgagtcgtcacacttatcagctcctgattctctttttaccgaacatcctgcagcttcagactctatcttgtggaaaactggcaataaccaa |
30436481 |
T |
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| Q |
128 |
tttcagctgcaaccaagatagagtcgtgcttgcgagccatgtggatttcaaaatttctttgagcgactcctc--gtgggagtattgatgtggcagactgg |
225 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30436480 |
tttcagatgcaaccaagatagagtcgtgcgtgcgagccatgtggatttcaaaatttctttgagcgactcctcgtgtgggagtattgatgtggcagactgg |
30436381 |
T |
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| Q |
226 |
cagtagcattttctgcacaaaaca |
249 |
Q |
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||||||||||||||| |||||||| |
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| T |
30436380 |
cagtagcattttctgaacaaaaca |
30436357 |
T |
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