View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_high_43 (Length: 249)
Name: NF1293_high_43
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_high_43 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 30435569 - 30435811
Alignment:
| Q |
6 |
ccctagctgatgctatcccaaggaaagtgacaccgaattcaatctatctcatccttaacagaatcatcaaatccaaccgatacaaactggccagcctcat |
105 |
Q |
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| T |
30435569 |
ccctcgctgctgctatcccaaggaaagcgacaccgaattcaatctatctcatccttaacagaatcatcaaatccaaccgatacaaactggccagcctcat |
30435668 |
T |
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| Q |
106 |
acatcatccgattaagttagttcaacaattattcattcatttaatcaaccatataagttnnnnnnnnntgcaataggggctgggaatcaaaagaagcata |
205 |
Q |
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| T |
30435669 |
gcatcatccgattaagttagttcaacaattattcattcatttaatcaaccatataagtt-aaaaaaaatgcaataggggctgggaatcaaaagaagcata |
30435767 |
T |
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| Q |
206 |
aaggaattagaggactgactcaataaagttaccattgattcact |
249 |
Q |
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| T |
30435768 |
aaggaattagaggactgactcaatatagttaccattgattcact |
30435811 |
T |
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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 47765315 - 47765370
Alignment:
| Q |
193 |
caaaagaagcataaaggaattagaggactgactcaataaagttaccattgattcac |
248 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |
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| T |
47765315 |
caaaagaagcataaaggaattataggactgactcaagaaagttatcattgattcac |
47765370 |
T |
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