View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_10 (Length: 512)
Name: NF1293_low_10
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 9e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 31 - 247
Target Start/End: Original strand, 26312189 - 26312405
Alignment:
| Q |
31 |
acaccatgagtcagaagtgtaaatggtactaaatac-ccatgagtcagaagtgatagttctaaataaattggtaatagttctaaatacaccatgaggtaa |
129 |
Q |
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| T |
26312189 |
acaccatgagtcagaagtttaaatggtactaaatacaccatgagtcagaagtgatagttctaaataaat-ggtaatagttctaaatacaccatgaggcaa |
26312287 |
T |
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| Q |
130 |
tagttcaaaaaattgtgcacatatggtactaaatacaccatgagtctgaagtaatagttttctataaattaaattaatgcaagaaaacaaaaatcactca |
229 |
Q |
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| T |
26312288 |
tagttctaaaaattgtgtacatatggtactaaatacaccatgagtccgaagtaatagttttctataaattaaattaatgcaagaaaaaaaaaatcactca |
26312387 |
T |
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| Q |
230 |
ttatttatatgcatatca |
247 |
Q |
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| T |
26312388 |
ttatttatatgcatatca |
26312405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 446 - 512
Target Start/End: Complemental strand, 26312764 - 26312698
Alignment:
| Q |
446 |
tatatatgatggcaggaaggtgataactttggaatggctgccttgaatgatcattgtcatatgggcc |
512 |
Q |
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| T |
26312764 |
tatatatgatggcaggaaggtgataactttggaatggctgccttgaatgatcattgtcatatgggcc |
26312698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 26312439 - 26312491
Alignment:
| Q |
321 |
aaggctaactcactataatatcgatgagcaagaatttcttgccaaacatgttt |
373 |
Q |
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| T |
26312439 |
aaggctaactcactataatatcgatgagcaagaatttcttgccaaacatgttt |
26312491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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