View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1293_low_12 (Length: 472)

Name: NF1293_low_12
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1293_low_12
NF1293_low_12
[»] chr6 (14 HSPs)
chr6 (1-464)||(5725121-5725584)
chr6 (38-464)||(4365754-4366186)
chr6 (36-464)||(4370152-4370580)
chr6 (256-460)||(4414147-4414352)
chr6 (219-396)||(4360539-4360716)
chr6 (287-459)||(4390245-4390417)
chr6 (287-459)||(4377562-4377734)
chr6 (50-191)||(4360370-4360514)
chr6 (36-107)||(4414493-4414563)
chr6 (38-102)||(4377310-4377374)
chr6 (38-102)||(4384883-4384947)
chr6 (38-102)||(4389993-4390057)
chr6 (287-459)||(4385132-4385304)
chr6 (44-96)||(21031588-21031640)
[»] chr8 (1 HSPs)
chr8 (50-102)||(15658701-15658753)


Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 5725584 - 5725121
Alignment:
Q  1 caacatctcaccagccttttcatagcatgttgcactgtccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatctta 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725584 caacatctcaccagccttttcatagtatgttgcactgtccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatctta 5725485  T
Q  101 aatagttcttcaggtgaacttatatcagctgattcaacagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725484 aatagttcttcaggtgaacttatatcagctgattcaacagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaact 5725385  T
Q  201 ccttctcatcataccagtcatcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725384 ccttctcatcataccagtcatcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatc 5725285  T
Q  301 cgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactcttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725284 cgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactcttt 5725185  T
Q  401 accgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttcatctc 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  5725184 accgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagcttgacatgcttcttctc 5725121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 38 - 464
Target Start/End: Original strand, 4365754 - 4366186
Alignment:
Q  38 tccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtgaactt-----atatcagctga 132  Q
    ||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||  ||||| ||  ||     |||||||  |     
T  4365754 tccgtcacaatgtggacagcattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttctcaggcga--ttccaacatatcagacgc 4365851  T
Q  133 ttcaacagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttctca---tcataccagtcatcgaccatt 229  Q
     |||| ||||||||||||||||||||||||||||||||| || ||  |||||||||||  ||||  |||| | |||   |||  | |  |||| ||||||    
T  4365852 atcaatagacttcaaaaagaatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagccgatccatcaaccatt 4365951  T
Q  230 atggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcga 329  Q
    ||||||||||||||||  ||||| | ||||||||||||  ||||||||||  |||| |||| ||||||||||||||||||||||||| ||||||||||      
T  4365952 atggtgcaacctgttactttccatatagctctatgttcctccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcat 4366051  T
Q  330 aagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgta 429  Q
    |||||||||| ||||| ||||| || ||| ||||||||| |||| |||||||  ||||||||||||||||| ||||   || | ||||| ||||||||||    
T  4366052 aagacggtggattaaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgtaaacggtatggcattgttgta 4366151  T
Q  430 gaaaaaccttgcaatagctcgacatgcttcatctc 464  Q
    |||||||||||||||  || |||||||||| ||||    
T  4366152 gaaaaaccttgcaatcacttgacatgcttcctctc 4366186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 36 - 464
Target Start/End: Original strand, 4370152 - 4370580
Alignment:
Q  36 tgtccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtgaactt-----atatcagct 130  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||  ||||  |||  ||| ||||  ||||| ||  ||     ||||||| |    
T  4370152 tgtccgtcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcga--ttccaacatatcagtt 4370249  T
Q  131 gattcaacagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttct-catcataccagtcatcgaccatt 229  Q
    |  |||| ||||||||||||||||||||| ||||||||||| || || ||||||| ||||  ||||  |||  ||| | |||  | |  |||| ||||||    
T  4370250 gcatcaatagacttcaaaaagaatgttccgtttggactgttcactaacaagtttattatggtccta--ctc--tctgcgtcaaccgatccatcaaccatt 4370345  T
Q  230 atggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcga 329  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||||||||  |||| |||| ||||||||||||||||||||||||| ||||||||||      
T  4370346 atggtgcaacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcat 4370445  T
Q  330 aagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgta 429  Q
    |||||||||||||||| ||| | || ||| ||||||||| |||| |||||||  ||||||||||||||| | ||||  ||| | ||||| ||||||||||    
T  4370446 aagacggtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcattgttgta 4370545  T
Q  430 gaaaaaccttgcaatagctcgacatgcttcatctc 464  Q
    ||||||||||||||| ||| |||||||||| ||||    
T  4370546 gaaaaaccttgcaatcgcttgacatgcttcctctc 4370580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 256 - 460
Target Start/End: Complemental strand, 4414352 - 4414147
Alignment:
Q  256 agctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt-aatctcatcgaaagacggtggcttaaaccctacacc 354  Q
    ||||||||||||| ||||||||||| |||| |||| |||||| |||| ||||||||||||||| ||  ||||| ||||| ||||||  ||| ||||  ||    
T  4414352 agctctatgttctaccaaagcttcctttgtcaacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaatcctaaccc 4414253  T
Q  355 atgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacat 454  Q
    |||| |||||||||  | ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||| |     
T  4414252 atgtcttgaaaccaactgacacatagtaataaactcatcactctttaccgcatcaagcggtatgtcattgttgtagaaaaaccttgcaaccgctcgagaa 4414153  T
Q  455 gcttca 460  Q
    ||||||    
T  4414152 gcttca 4414147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 396
Target Start/End: Original strand, 4360539 - 4360716
Alignment:
Q  219 catcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt 318  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||  | || |||| || ||| ||||  |||||||||| |      
T  4360539 catcgaccattatgctgcaacctgtgatcttccacatagctctatgttcttccaaaacttcattcgtcaacttaatttcttccggaaaatatttccatcc 4360638  T
Q  319 aatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcact 396  Q
    ||| |||  |||   |||||||||||| ||||| |||||| ||||||||| ||||||||| ||  |||||||||||||    
T  4360639 aatatcaaagaaccccggtggcttaaatcctacgccatgtcttgaaaccaaatcacacattgtcttaaattcatcact 4360716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 287 - 459
Target Start/End: Original strand, 4390245 - 4390417
Alignment:
Q  287 aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa 386  Q
    |||| |||||| ||| ||||||| ||||||||||||||||| |||||||| |||  |||||||||||||  | | |||||||||||||||||  ||| ||    
T  4390245 aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcacaaaccctacaccacatctcgaaaccatatcacacattctaacaa 4390344  T
Q  387 attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc 459  Q
    | || | |||||| ||||| |  | | ||||  ||||||||||||||||||| ||||| |||||||| |||||    
T  4390345 actccttactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttc 4390417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 459
Target Start/End: Original strand, 4377562 - 4377734
Alignment:
Q  287 aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa 386  Q
    |||| |||||| ||| ||||||| ||||||||||||||||| |||||||| |||  |||||||||||||  | | |||||||||||||||||   || ||    
T  4377562 aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcacaaaccctacaccacatctcgaaaccatatcacacattcgaacaa 4377661  T
Q  387 attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc 459  Q
    | ||   |||||| ||||| |  |   |||| | |||||||||||||||||| ||||| |||||||| |||||    
T  4377662 actccatactcttcaccgccttcattggtattaaattgttgtagaaaaacctcgcaatcgctcgacacgcttc 4377734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 4360370 - 4360514
Alignment:
Q  50 tggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtg-----aacttatatcagctgattcaacagactt 144  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||  ||||  |     |||  |||||||  |  |||| || |||    
T  4360370 tggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaagagtttctcagacgattccaac--atatcagacgcatcaatagtctt 4360467  T
Q  145 caaaaagaatgttccctttggactgtttacgaagaagtttagtatgt 191  Q
    ||||||||||||||||||||||||||| |  || |||||||||||||    
T  4360468 caaaaagaatgttccctttggactgttcagtaacaagtttagtatgt 4360514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 4414563 - 4414493
Alignment:
Q  36 tgtccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagtt 107  Q
    |||| ||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||| ||||    
T  4414563 tgtctgtcacaatttggacaacattttctt-cccaacctcttctacaatttcatccatcatcttaaagagtt 4414493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 4377310 - 4377374
Alignment:
Q  38 tccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa 102  Q
    ||||| |||| ||| |||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  4377310 tccgttacaacttgaacaacattttcttccccaacctcttcaacaacatcatccatcatcttaaa 4377374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 4384883 - 4384947
Alignment:
Q  38 tccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa 102  Q
    ||||| |||| ||| |||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  4384883 tccgtgacaacttgaacaacattttcttccccaacctcttcaacaacatcatccatcatcttaaa 4384947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 4389993 - 4390057
Alignment:
Q  38 tccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa 102  Q
    |||||||||| ||| |||||||||||||| ||||| ||||||||||  |||||||||||||||||    
T  4389993 tccgtcacaacttgaacaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa 4390057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 459
Target Start/End: Original strand, 4385132 - 4385304
Alignment:
Q  287 aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa 386  Q
    |||| |||||| ||| ||||||| |||||| |||||||||| ||||| || |||  |||||||||||||  | | ||||||||| |||||||   || ||    
T  4385132 aacttaacttcttccctcaaatacttccctctaatctcatcaaaagatggcggcacaaaccctacaccacatctcgaaaccatagcacacatttgaacaa 4385231  T
Q  387 attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc 459  Q
    | ||   |||||| ||||| |  | | ||||  ||||||||||||||||||| ||||| |||||||| |||||    
T  4385232 actccatactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttc 4385304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 21031640 - 21031588
Alignment:
Q  44 acaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcat 96  Q
    ||||| ||||||||||||||||  || ||||| |||||| |||||||||||||    
T  21031640 acaatgtggacaacattttcttgacccacttcctcaacattgtcatccatcat 21031588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 15658753 - 15658701
Alignment:
Q  50 tggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa 102  Q
    ||||||||||||||||| ||||  ||||||||||  ||||| |||||||||||    
T  15658753 tggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa 15658701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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