View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_13 (Length: 457)
Name: NF1293_low_13
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 230 - 399
Target Start/End: Original strand, 28345109 - 28345277
Alignment:
| Q |
230 |
gttcacaagatcatggtaaggcaatattcaagctcaactaatttatttannnnnnngcacttatcaaatctaagttataaaaatttccaattttcaaaag |
329 |
Q |
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| T |
28345109 |
gttcacaagatcatggtaaggcaatattcaagctcaactaatttttatttttttttgcacttatcaaatctaagttataaaaatttccatttttcaaaag |
28345208 |
T |
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| Q |
330 |
ttcnnnnnnnnnnnnncttctcttgaaattcatccatcaaatgacggatctatcatttagaacaagattt |
399 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28345209 |
ttcaaagaataaaac-cttctcttgaaattcatccatcaaatgacggatctatcatttagaacaagattt |
28345277 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 28344995 - 28345071
Alignment:
| Q |
96 |
tatcacttggaacaagaaaatttacaagatctttgttctctttttatgcctaggtttgaccatcacacaagataagg |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28344995 |
tatcacttggaacaagaaaatttacaagatctttgttctctttttatgcctaggtttgaccatcacacaagataagg |
28345071 |
T |
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