View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_14 (Length: 453)
Name: NF1293_low_14
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 35 - 330
Target Start/End: Complemental strand, 34981990 - 34981704
Alignment:
| Q |
35 |
atttcagataacttctgttatcattctagacatatatacaacatatatcacatctcatgatgtctatacatgatccatatcattaaccgattccctaatt |
134 |
Q |
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| T |
34981990 |
atttcagataacttctgttatcattctacacatatatacaacatatatcacatctcatgatgtctatacatgatccatatcattaaccgatcccctaatt |
34981891 |
T |
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| Q |
135 |
tcttcagcatttgaactttcatgtagtttgtaaggttaaatatgtttctagttttataggatatccannnnnnnattttaatccccgtcactttttgaca |
234 |
Q |
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| T |
34981890 |
tcttcagcatttaaactttcttgtagtttgtaa---------tgtttctagttttataggatatccatttttttattttaatccccgtcactttttgaca |
34981800 |
T |
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| Q |
235 |
aattgtagtctcttttttagagatagtgactaaactactctaaaaatatgaactaaaactgaccacaatttttatagaaaccaaacttgaaagaat |
330 |
Q |
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| T |
34981799 |
aattgtagtctcttttttagagatagtgactaaactactctaaaaatatgaactaaaactgaccacaatttttatagaaaccaaacttgaaagaat |
34981704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 339 - 446
Target Start/End: Complemental strand, 34981374 - 34981267
Alignment:
| Q |
339 |
ttataggacttaaagcatatttaactcttacgtatatgtttaacaagcttttcaacccttacgcatatgtttaacaatcttttgacacataatccttcag |
438 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34981374 |
ttattggacttaaagcatatttaactcttacgtatatgtttaacaatcttttcaacccttacgtatatgtttaacaatcttttgacacataatccttcaa |
34981275 |
T |
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| Q |
439 |
aataatct |
446 |
Q |
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| T |
34981274 |
aataatct |
34981267 |
T |
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