View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_20 (Length: 413)
Name: NF1293_low_20
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 4370940 - 4370567
Alignment:
| Q |
11 |
cataggcttaagtcctaacatgttgttacttgttacaacatcctgttataatagatctcggctttatgatcttcaatcgatgggtgaaatcaaactatgt |
110 |
Q |
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| T |
4370940 |
cataggcttaagtcctaacatgttgttccttgttacaacatcctgttataatagatctcggctttatgatcttcaatcaatgggtgaaatcaaactatgt |
4370841 |
T |
|
| Q |
111 |
gaaaactagtcaaataaattgaactgttgaatcacttttttatggatgagatcaattactgcattaaactaaatgaaactgcgtgaaacagttacaacag |
210 |
Q |
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| T |
4370840 |
gaaaactagtcaaataaattgaactgttgaatcacttttttatggatgagatcaattactgcattaaactaagtgaaactgcgtgaaacagttacaacag |
4370741 |
T |
|
| Q |
211 |
acaatccagatttgaaattataatgtttactcatccatgaatgaatgtggctgtttggatccgcggtagaacactctagacgcgcattcgtagtggtcaa |
310 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |
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| T |
4370740 |
acaatccaaatttgaaattatgatgtttactcatccatgaatgaatgtggctgtttggatccacggtagaacgctctagacgcgcgttcgtagtggtcaa |
4370641 |
T |
|
| Q |
311 |
acatggtttgaccgtaaactttcatgtttggcttatattcctctaaattgattccaccttcaaaatcatggtag |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4370640 |
acatggtttgaccgtaaactttcatgtttggcttatattcctctaaatcgattccaccttcaaaatcatggtag |
4370567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 257 - 384
Target Start/End: Complemental strand, 7827246 - 7827118
Alignment:
| Q |
257 |
gtggctgtttggatccgcggtagaacactctagacgcgcattcgtagtggtcaaacatggtttgacc-gtaaactttcatgtttggcttatattcctcta |
355 |
Q |
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||||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
7827246 |
gtggctgtttggatccgcggtagtacgctctagacgcgcgttcgtagtagtcaaacatggtttgacccgtaaacttttatgtttggcttatattcctcta |
7827147 |
T |
|
| Q |
356 |
aattgattccaccttcaaaatcatggtag |
384 |
Q |
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||| ||||||||||||||||||| ||||| |
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| T |
7827146 |
aatcgattccaccttcaaaatcacggtag |
7827118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 257 - 384
Target Start/End: Complemental strand, 52967700 - 52967573
Alignment:
| Q |
257 |
gtggctgtttggatccgcggtagaacactctagacgcgcattcgtagtggtcaaacatggtttgaccgtaaactttcatgtttggcttatattcctctaa |
356 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52967700 |
gtggctgtttggatccgcggtagaacgctctagacgcgcgttcgtagtggtcaaacatggtttgaccgtaaactttcatgtttggcttatattcctctaa |
52967601 |
T |
|
| Q |
357 |
attgattccaccttcaaaatcatggtag |
384 |
Q |
| |
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|| ||||||||||||||||||| ||||| |
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| T |
52967600 |
atcgattccaccttcaaaatcacggtag |
52967573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 43682033 - 43681961
Alignment:
| Q |
78 |
gatcttcaatcgatgggtgaaatcaaactatgtgaaaactagtcaaataaat-tgaactgttgaatcactttt |
149 |
Q |
| |
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|||| ||||||| ||| ||| |||||||| ||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
43682033 |
gatcctcaatcggtggctgagatcaaactgtgtgaaaaccggacaaataaatctgaactgttgaatcactttt |
43681961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 257 - 378
Target Start/End: Complemental strand, 4954932 - 4954811
Alignment:
| Q |
257 |
gtggctgtttggatccgcggtagaacactctagacgcgcattcgtagtggtcaaacatggtttgaccgtaaactttcatgtttggcttatattcctctaa |
356 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4954932 |
gtggttgtttggatccgcggtagaacactctagacgcgcgttcgtagtggtcaaacatggtttgaccgtaaactttcatgtttggcttatattcctctaa |
4954833 |
T |
|
| Q |
357 |
attgattccaccttcaaaatca |
378 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
4954832 |
atcgattccaccttcaaaatca |
4954811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 257 - 384
Target Start/End: Original strand, 28640698 - 28640825
Alignment:
| Q |
257 |
gtggctgtttggatccgcggtagaacactctagacgcgcattcgtagtggtcaaacatggtttgaccgtaaactttcatgtttggcttatattcctctaa |
356 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||| |||| | ||||||||||||||| |||||||||| | |||||||||||||||||||||||| ||||| |
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| T |
28640698 |
gtggctgtttggatacgcgatagaacgctctaaacgcacgttcgtagtggtcaaatatggtttgacttttaactttcatgtttggcttatattcttctaa |
28640797 |
T |
|
| Q |
357 |
attgattccaccttcaaaatcatggtag |
384 |
Q |
| |
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|| ||||||||||||||||||| ||||| |
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| T |
28640798 |
atcgattccaccttcaaaatcacggtag |
28640825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 34140286 - 34140374
Alignment:
| Q |
77 |
tgatcttcaatcgatgggtgaaatcaaactatgtgaaaactagtcaaataaat-tgaactgttgaatcacttttttatggatgagatca |
164 |
Q |
| |
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||||||||||| ||||| ||| ||||| || |||||||||| ||||| |||| | || ||||||||||||||||| || |||||||| |
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| T |
34140286 |
tgatcttcaattgatggctgagatcaagctgtgtgaaaactgctcaaacaaatctaaatcgttgaatcacttttttacggttgagatca |
34140374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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