View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_21 (Length: 412)
Name: NF1293_low_21
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 161 - 337
Target Start/End: Complemental strand, 21424607 - 21424432
Alignment:
| Q |
161 |
aaaatgttgcacaacaatcctttaagtggaatctgttaactagtctgttnnnnnnnnn-tttaacgttatgttcatcttctc-aatgttcacacaagctt |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21424607 |
aaaatgttgcacaacaatcctttaagtggaatctgttaactagtctgttaaaaaaaaaatttaacgttatgttcatcttctccaatgttcacacaagctt |
21424508 |
T |
|
| Q |
259 |
cttcttctcagtaacccttcaaactgcaaaaaccctaaaaaatcaaatctcaaaattcatggcatcctcacgcacacaa |
337 |
Q |
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| T |
21424507 |
cttct---caatcacccttcaacctgcaagaaccctaaaaaatcaaatctcaaaattcatggcatccttacgcacacaa |
21424432 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 161 - 337
Target Start/End: Complemental strand, 29706841 - 29706666
Alignment:
| Q |
161 |
aaaatgttgcacaacaatcctttaagtggaatctgttaactagtctgttnnnnnnnnnt-ttaacgttatgttcatcttctc-aatgttcacacaagctt |
258 |
Q |
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| T |
29706841 |
aaaatgttgcacaacaatcctttaagtggaatctgttaactagtctgttaaaaaaaaaaattaacgttatgttcatcttctctaatgttcacacaagctt |
29706742 |
T |
|
| Q |
259 |
cttcttctcagtaacccttcaaactgcaaaaaccctaaaaaatcaaatctcaaaattcatggcatcctcacgcacacaa |
337 |
Q |
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| T |
29706741 |
cttct---caatcacccttcaacctgcaagaaccctaaaaaatcaaatctcaaaattcatggcatccttacgcacacaa |
29706666 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 29706657 - 29706610
Alignment:
| Q |
331 |
cacacaatcattttccggttccttcgtttctgggggatgcaacctgtt |
378 |
Q |
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||||||||||||||||||||| ||| ||||||||||| |||||||||| |
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| T |
29706657 |
cacacaatcattttccggttctttcatttctgggggacgcaacctgtt |
29706610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 41172266 - 41172225
Alignment:
| Q |
296 |
aaaaatcaaatctcaaaattcatggcatcctcacgcacacaa |
337 |
Q |
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||||||||||||| |||| |||||||||||||||||||||| |
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| T |
41172266 |
aaaaatcaaatcttgaaatccatggcatcctcacgcacacaa |
41172225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 161 - 337
Target Start/End: Complemental strand, 14161458 - 14161282
Alignment:
| Q |
161 |
aaaatgttgcacaacaatcctttaagtggaatctgttaactagtctgttnnnnnnnnnt--ttaacgttatgttcatcttctc-aatgttcacacaagct |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
14161458 |
aaaatgttgcacaacaatcctttaagtggaatctgttaactagtctgttaaaaaaaaaaaattaacgttatgttcatcttctctaatgttcacacaagct |
14161359 |
T |
|
| Q |
258 |
tcttcttctcagtaacccttcaaactgcaaaaaccctaaaaaatcaaatctcaaaattcatggcatcctcacgcacacaa |
337 |
Q |
| |
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|||||| || | ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
14161358 |
tcttct---caatcacccttcaacctgcaagaaccctaaaaaatcaaatctcaaaattcatggcatccttacgcacacaa |
14161282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 14161273 - 14161226
Alignment:
| Q |
331 |
cacacaatcattttccggttccttcgtttctgggggatgcaacctgtt |
378 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||| |||||||||| |
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| T |
14161273 |
cacacaatcattttccggttctttcatttctgggggacgcaacctgtt |
14161226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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