View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_24 (Length: 388)
Name: NF1293_low_24
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 38730108 - 38730485
Alignment:
| Q |
1 |
agcatagctcattaattgtgtaaatataaatttaacaaatttaaacaaaataaaatatgaaattaagagatccaattattcaaatgaaagttctcattaa |
100 |
Q |
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| T |
38730108 |
agcatagctcattaattgtgtaaatataaatttaacaaatttaaacaaaataaaatatgaaattaagagatccaattattcaaatgaaagttctcattaa |
38730207 |
T |
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| Q |
101 |
gtagatcaaatctacaaaatttgtacaattcaaaaatttgatgcttcgtatttcactatatctgatatgatatctaaattcaagtaaatgactgttgtga |
200 |
Q |
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| T |
38730208 |
gtagatcaaatctacaaaatttgtacaattcaaaaatttgatgcttcgtatttcactatatctgatatgatatctaaattcaagtaaatgactgttgtga |
38730307 |
T |
|
| Q |
201 |
agtcgcattcctacaaagcatatgtatgctaaatttgacacacacttatgtgatgtgagatagagtacagcatgggaagtgtatatgtaaccagtcttcc |
300 |
Q |
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| T |
38730308 |
agtcgcatccctgcaaagcatatgtatgctaaatttgacacacacttatgtgatgtgagatagagcacagcatgggaagtgtatatgtaaccagtctttc |
38730407 |
T |
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| Q |
301 |
tagaggtgtttaactttaatcagaaatgcttcaactaaactgggaaacccgattttgcaggtgattatgagacctatg |
378 |
Q |
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| T |
38730408 |
tagaggtgtttaactttaatcagaaatgcttcaactaaactgggaaacccgattttgcaggtgattatgagacctatg |
38730485 |
T |
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