View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_25 (Length: 384)
Name: NF1293_low_25
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 411050 - 411248
Alignment:
| Q |
30 |
gttgtgtgttgttgtcattgagttaacaattgattcatatcgtttctgtgagtttactgttgttggaacagaaatttggaatttgtgattattgggtttc |
129 |
Q |
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| T |
411050 |
gttgtgtgttgttgtcattgaggtaacaattgattcatatcgtttctgtgagtttactgttgttggaacagaaatttggaatttgtgattattgggtttc |
411149 |
T |
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| Q |
130 |
agtttgaagttatgtttttgagtaatttgaaatgacagtatgcttagaatatctattgaaatgtgtatgaatctattgttagaaagaattttcatgaaa |
228 |
Q |
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| T |
411150 |
agtttgaagttatgtttttgagtaatttgaaatgacagtatgcttagaatatctattgaaatgtgtatgaatctattgttagaaagaattttcatgaaa |
411248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 296 - 363
Target Start/End: Original strand, 411251 - 411318
Alignment:
| Q |
296 |
tgtatagtgttcttcaatagaagtcaaccgaactaaacgaagcattgattgatccaaccctgatgatg |
363 |
Q |
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| T |
411251 |
tgtatagtgttcttcaatagaagtcaaccgaactaaacgaagcattgattgatccaaccctgatgatg |
411318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 972940 - 972809
Alignment:
| Q |
34 |
tgtgttgttgtcattgagttaacaattgattcatatcgtttctgtgagtttactgttgttggaacagaaatttggaatttgtgattat-tgggtttcagt |
132 |
Q |
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| T |
972940 |
tgtgttgttatcactgaggtaacaatttcttcatatcatttttgtgaatttactgttgttggaatagaaacttggaatttgcgatgataagggtttcagt |
972841 |
T |
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| Q |
133 |
ttgaag-ttatgtttttgagtaatttgaaatg |
163 |
Q |
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| T |
972840 |
ttgaagtttatgattttgagtaatttgaaatg |
972809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 404900 - 405018
Alignment:
| Q |
41 |
ttgtcattgagttaacaattgattcatatcgtttctgtgagtttactgttgttggaacagaaatttggaatttgtgattattggg-tttcagtttgaag- |
138 |
Q |
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| T |
404900 |
ttgtcactgagctaacaattgcttcatatcattcctgtgaatttactgtcgttggtataaaaatttggaatttgtgatgatggggatttcagtttgaagt |
404999 |
T |
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| Q |
139 |
ttatgtttttgagtaattt |
157 |
Q |
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| T |
405000 |
ttatgtttttgagtaattt |
405018 |
T |
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