View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_26 (Length: 382)
Name: NF1293_low_26
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 41775566 - 41775263
Alignment:
| Q |
12 |
atgaaagcaagaaaaagtaacaaacctatgaagagaataatgataaggacagtgatgagccagtaagggaaaacaacactaagagcaacaccaacagtga |
111 |
Q |
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| T |
41775566 |
atgaaagcaagaaaaagtaacaaacctatgaagagaataatgataaggacagtgatgagccagtaagggaaaacaacactaagagcaacaccaacagtga |
41775467 |
T |
|
| Q |
112 |
taccaagcataagcataggttgaaaaagaagagctagatcataatccaatattggaacatcttttgttggatgacgcactcttaggttgtaaaatacaga |
211 |
Q |
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| T |
41775466 |
taccaagcataagcataggttgaaaaagaagagctagatcataatccaatattggaacatcttttgttggatgacgcactcttaggttgtaaaatacaga |
41775367 |
T |
|
| Q |
212 |
agatgttgatgctcccattatcatacctaaaacatagtcaacaacacaaaaacttagttacaacaacttcctctgtttctaatcaagcattgaaatgaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41775366 |
agatgttgatgctcccattatcatacctaaaacatagtcaacaacacaaaaacttagttataacaacttcctctgtttctaatcaagcattgaaatgaaa |
41775267 |
T |
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| Q |
312 |
actt |
315 |
Q |
| |
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|||| |
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| T |
41775266 |
actt |
41775263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 354
Target Start/End: Complemental strand, 41775240 - 41775201
Alignment:
| Q |
315 |
tcggtggccatctcttagtgtcgtgtccggtgtctgtgtt |
354 |
Q |
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| T |
41775240 |
tcggtggccatgtcttagtgtcgtgtccggtgtctgtgtt |
41775201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 26958777 - 26958987
Alignment:
| Q |
34 |
aacctatgaagagaataatgataaggacagtgatgagccagtaagggaaaacaacactaagagcaacaccaacagtgataccaagcataagcataggttg |
133 |
Q |
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|||||||||||||||| || || ||||||||||| ||||| |||||||||||||||| |||| |||||||||||| || |||||||||||||| || || |
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| T |
26958777 |
aacctatgaagagaatgataatgaggacagtgataagccaaaaagggaaaacaacactgagagtaacaccaacagtaatcccaagcataagcattggctg |
26958876 |
T |
|
| Q |
134 |
aaaaagaagagctagatcataatccaatattggaacatcttttgttggatgacgcactcttaggttgtaaaatacagaagatgttgatgctcccattatc |
233 |
Q |
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||| | |||||| | |||||| || |||||||| || | ||||||||||||| |||||| | || || | || || |||| |||||| ||||||||| |
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| T |
26958877 |
aaacaaaagagccaaatcatagtctaatattggcacttgttttgttggatgagccactctcaaattataccaaactgatgatgctgatgcccccattatc |
26958976 |
T |
|
| Q |
234 |
atacctaaaac |
244 |
Q |
| |
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||||||||||| |
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| T |
26958977 |
atacctaaaac |
26958987 |
T |
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