View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_29 (Length: 365)
Name: NF1293_low_29
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 43 - 336
Target Start/End: Complemental strand, 11019539 - 11019246
Alignment:
| Q |
43 |
gcatggacacacatttcgaattttattccatctaaagaattatttctaattttcaacgaagaaggaaaggggaatttggtgatacactattccaagaagc |
142 |
Q |
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| T |
11019539 |
gcatggacacacttttcgaattttattccctctaaagatctatttttaattttcaacgaagaaggaaaggggaatttggtgataaactattccaagaagc |
11019440 |
T |
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| Q |
143 |
atgctctctccatgaatctcccaactttttcaaatcaaaaagagaagatccacctcctcctcttgcttccttagcacatattttcattttcaaaatcctc |
242 |
Q |
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| T |
11019439 |
atgctccctccatgaatctcccaactttttcaaatcaacaagagaagatccacctcctcctcttgcctccttagcacttattttcattttcaaaatcctc |
11019340 |
T |
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| Q |
243 |
tctttaatctcctttccacgattcgattccatcaactccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttca |
336 |
Q |
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| T |
11019339 |
tctttaatatcctttccacggtccgattccatcaactccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttca |
11019246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 111 - 318
Target Start/End: Complemental strand, 11080231 - 11080024
Alignment:
| Q |
111 |
ggggaatttggtgatacactattccaagaagcatgctctctccatgaatctcccaactttttcaaatcaaaaagagaagatccacctcctcctcttgctt |
210 |
Q |
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| T |
11080231 |
ggggaatttggagatacactagtccaagaagcatgctccctccaagaatctcctaactttttcaaatcaacaagagaagatccacctcctcctcttgctt |
11080132 |
T |
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| Q |
211 |
ccttagcacatattttcattttcaaaatcctctctttaatctcctttccacgattc-gattccatcaactccttaactctctcacccaactctgtgccac |
309 |
Q |
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| T |
11080131 |
ccttagcacttattttcatcttcaaaattgtctctctaacct-ctttccccttttctgattccatcaactccttaactctctcccccaactcattttcac |
11080033 |
T |
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| Q |
310 |
tcacaaacc |
318 |
Q |
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||||||||| |
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| T |
11080032 |
tcacaaacc |
11080024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 111 - 318
Target Start/End: Complemental strand, 11003090 - 11002883
Alignment:
| Q |
111 |
ggggaatttggtgatacactattccaagaagcatgctctctccatgaatctcccaactttttcaaatcaaaaagagaagatccacctcctcctcttgctt |
210 |
Q |
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||||||||||| |||| |||| || ||||||||||||| ||||| |||||||| ||| |||||||||||| |||||||||||||||||||||| |||| | |
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| T |
11003090 |
ggggaatttggagataaactagtcaaagaagcatgctccctccaagaatctcctaaccttttcaaatcaacaagagaagatccacctcctccttttgcct |
11002991 |
T |
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| Q |
211 |
ccttagcacatattttcattttcaaaatcctctctttaatctcctttccacgattc-gattccatcaactccttaactctctcacccaactctgtgccac |
309 |
Q |
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| T |
11002990 |
ccttagcacttgttttcatcttcaaaattgtctctctaatct-ctttccctttttctgattccatcaactccttaactctctcccccaactcatttccac |
11002892 |
T |
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| Q |
310 |
tcacaaacc |
318 |
Q |
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| T |
11002891 |
tcacaaacc |
11002883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 11050557 - 11050445
Alignment:
| Q |
39 |
attggcatggacacacatttcgaattttattccatctaaagaattatttctaattttcaacgaagaaggaaaggggaatttggtgatacactattccaag |
138 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| | |||||| ||||| ||||||||||| |
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| T |
11050557 |
attggcatggacacacttttcgaattttattccctctaaagatctatttttaattttcaacgaagaaggaaagtgaaatttgatgataaactattccaag |
11050458 |
T |
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| Q |
139 |
aagcatgctctct |
151 |
Q |
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|||||| |||||| |
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| T |
11050457 |
aagcatcctctct |
11050445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 268 - 336
Target Start/End: Complemental strand, 11050430 - 11050362
Alignment:
| Q |
268 |
attccatcaactccttaactctctcacccaactctgtgccactcacaaacctattttctgattggttca |
336 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
11050430 |
attccatcaactccttaactctctcacccaattctgcgccactcacaaacctattttctgattggttca |
11050362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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