View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_3 (Length: 738)
Name: NF1293_low_3
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 700; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 1 - 724
Target Start/End: Complemental strand, 4142081 - 4141358
Alignment:
| Q |
1 |
aatatatgtttttgaggatgatcaagtgttgctgaagtatgattttgacttgaatttgattctttacaatcccaggacgggtactttcaaggctactaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4142081 |
aatatatgtttttgaggatgatcaagtgttgctgaagtatgattttgacttgaatttgattctttacaatcccaggaggggtactttcaaggctactaat |
4141982 |
T |
|
| Q |
101 |
tttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcataggattat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141981 |
tttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcataggattat |
4141882 |
T |
|
| Q |
201 |
ttcccatgaaaggttacatgttacttcttggattattaattaattgtcgaatggttttgcatcttcagaaattgctgtcattttcatttatattatttct |
300 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4141881 |
ttcccatgaaaggttacatgttatttcttggattattaattaattgtcgaatggttttgcatcttcagaaattgctgtcattttcatttatattatttct |
4141782 |
T |
|
| Q |
301 |
ttgttacaggtttttgttctctcgtcatacattacatttgatatatttcacaattatgcattgcattatatggttctttgtttggttttctatgattcta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4141781 |
ttgttacaggtttttgttctctcgtcatacgttacatttgatatatttcacaattatgcattgcattatatggttctttgtttggttttctatgattcta |
4141682 |
T |
|
| Q |
401 |
attatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggatgcacaaattttatataatgtttgctacaaatcttg |
500 |
Q |
| |
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|
| T |
4141681 |
attatgattttgatgtttttcaaatgcactgtaatatttattttttgcaatgtatgctcaaggatgcacaaatcttatataatgtttgctacaaatcttg |
4141582 |
T |
|
| Q |
501 |
catgtacagtatgaattgagataccgcgatggtcgcaatgggtatataaagaacgacaaagttataggagtgtagagcaaaatgaattacttatattgaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4141581 |
catgtacagtatgaattgagataccgcgatggtcacaatgggtatataaagaacgacaaagttataggagtgtagagcaaaatgaattacttatattgaa |
4141482 |
T |
|
| Q |
601 |
ctggttttctaccaacaaaggtagtatagtgtctctagagttaactagtgcagatgaataacaagctcattgcatttcaaagaaatactacattttgaat |
700 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4141481 |
ctggttttctatcaacaaaggtagtatagtgtctctagagttaactagtgcagatgaataacaagctcattgcatttcaaagaaatactacattttgaat |
4141382 |
T |
|
| Q |
701 |
aacaatctcattcgcaacgatatt |
724 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4141381 |
aacaatctcattcgcaacgatatt |
4141358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4157891 - 4157675
Alignment:
| Q |
1 |
aatatatgtttttgaggatgatcaagtgttgctgaagt---atgattttgacttgaatttgattctttacaatcccaggacgggtactttcaaggctact |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| | |||||||| ||||||| || ||||| ||||||||| |
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|
| T |
4157891 |
aatatatgtttttgaggatgatcaagtgttgctggagttgtatgattctgacttgaatttggtcctttacaaccccaggagcggcactttgaaggctact |
4157792 |
T |
|
| Q |
98 |
aattttaaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcataggat |
197 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||| |
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|
| T |
4157791 |
aattttaaactaattcctgaagtatgtattgaaagtttaatatcacctagttctcta---taggatgtagatgtagtgc--tgtcacttgagcataggat |
4157697 |
T |
|
| Q |
198 |
tatttcccatgaaaggttacatg |
220 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
4157696 |
tatttccca-gaaaggttacatg |
4157675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 3754713 - 3754895
Alignment:
| Q |
10 |
ttttgaggatgatcaagtgttgctgaagt------atgattttgacttgaatttgattctttacaatcccaggacgggtactttcaaggctactaatttt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||| ||||| || ||||||| ||| ||| |
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|
| T |
3754713 |
ttttgaggatgatcaagtgttgctgaagtttatgaatgatattgacttgaatttggttctttacaaccccaggagcggtaccttgaaggctattaacttt |
3754812 |
T |
|
| Q |
104 |
aaacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcactt |
186 |
Q |
| |
|
||| | ||| |||||||||| |||||||||||||||||| ||||||||||||| || ||||||| |||||||||||||| |
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|
| T |
3754813 |
aaatatactccagaagtctgtggtgaaagtttaatatcaccatcttctctatgctaggatgtagatgtggtgctatgtcactt |
3754895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 3754937 - 3755085
Alignment:
| Q |
214 |
ttacatgttacttcttggattattaattaattgtcgaatggtt----ttgcatcttcagaaattgctgtcattttcatttatattatttctttgtta-ca |
308 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| | |||||| | ||||| ||||||||| | |||||||||||||||||||||||| ||||||| |
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|
| T |
3754937 |
ttacatgttatttcatggattattaattaatggacgaatgaatgatattgcagcttcagaaacttctgtcattttcatttatattatttgtttgttattt |
3755036 |
T |
|
| Q |
309 |
ggtttttgttctctcgtcatacattacatttgatatatttcacaattatgca |
360 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||| ||||||||| |||| |
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|
| T |
3755037 |
ggttttttttctc---tcatacattacatttgatatagttcacaattttgca |
3755085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 1889409 - 1889345
Alignment:
| Q |
125 |
gttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgag |
189 |
Q |
| |
|
||||| ||||| ||||||||| ||||| |||||||||| ||||||| ||||||||||||||||| |
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|
| T |
1889409 |
gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag |
1889345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 479
Target Start/End: Original strand, 3755079 - 3755115
Alignment:
| Q |
443 |
ttttgcaatgtatgctcaaggatgcacaaattttata |
479 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3755079 |
ttttgcaatgtatgctcaaggatgcagaaattttata |
3755115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 2677807 - 2677757
Alignment:
| Q |
450 |
atgtatgctcaaggatgcacaaattttatataatgtttgctacaaatcttgca |
502 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| || ||||||||||| |
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|
| T |
2677807 |
atgtatgcttaaggatgcacaaattt--tataatgtttacttcaaatcttgca |
2677757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 251 - 478
Target Start/End: Original strand, 11082196 - 11082412
Alignment:
| Q |
251 |
atggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttca |
350 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
11082196 |
atggttttgtagcttcagaaatttctgtcattttcatttatattatttgtttgtcagaggtttttgttctctcatcatacattacatttgatatagttca |
11082295 |
T |
|
| Q |
351 |
caattatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaa |
450 |
Q |
| |
|
|||||||||||| | ||||||| | ||| |||| ||||||||||||||| ||| ||||||||| ||| |||||| || |||||||||| |
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|
| T |
11082296 |
caattatgcattacgttatatgatacttcgttt-aatttctatgattctaa----------gatatttttcaaaggcattgtaattttcattttttgcat |
11082384 |
T |
|
| Q |
451 |
tgtatgctcaaggatgcacaaattttat |
478 |
Q |
| |
|
||||||||||||| | ||||||| |||| |
|
|
| T |
11082385 |
tgtatgctcaaggttacacaaatattat |
11082412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 11081927 - 11082114
Alignment:
| Q |
11 |
tttgaggatgatcaagtgttgctgaagt------atgattttgacttgaatttgattctttacaatcccaggacgggtactttcaaggctactaatttta |
104 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| |||||||| |
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|
| T |
11081927 |
tttgaggatgatcaagtgttgttgaagtttatgaatgattttgacttgaatttgattctttacaatcctaggagccgtactttgaaggctaataatttta |
11082026 |
T |
|
| Q |
105 |
aacgaattcctgaagtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcat |
192 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| |||||||| ||||||||| || || ||||||| ||||| |||||||||||||| |
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|
| T |
11082027 |
aagatattccagaagtctgtgttgaaagtttagtatcaccttgttctctatattaagatgtagatgtggtgctttgtcacttgagcat |
11082114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 1427351 - 1427278
Alignment:
| Q |
255 |
ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcat |
328 |
Q |
| |
|
||||||| ||| ||||||||| | ||||||||||||||||| | ||||||| | |||||||||||||| |||| |
|
|
| T |
1427351 |
ttttgcaacttgagaaattgccattattttcatttatattatatgtttgttagaagtttttgttctctcctcat |
1427278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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