View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1293_low_34 (Length: 342)

Name: NF1293_low_34
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1293_low_34
NF1293_low_34
[»] chr7 (5 HSPs)
chr7 (123-233)||(14305188-14305298)
chr7 (121-255)||(48670133-48670264)
chr7 (144-233)||(23900413-23900502)
chr7 (171-233)||(47719596-47719658)
chr7 (174-233)||(47719003-47719062)
[»] chr1 (3 HSPs)
chr1 (126-233)||(47967960-47968067)
chr1 (126-233)||(24992068-24992175)
chr1 (171-233)||(37577538-37577600)
[»] chr2 (2 HSPs)
chr2 (126-233)||(29512993-29513100)
chr2 (174-233)||(36238624-36238683)
[»] chr4 (7 HSPs)
chr4 (174-233)||(55976265-55976324)
chr4 (171-233)||(37273249-37273311)
chr4 (173-233)||(45920402-45920462)
chr4 (173-233)||(55000786-55000846)
chr4 (126-233)||(24551794-24551901)
chr4 (174-233)||(55976850-55976909)
chr4 (126-227)||(2771317-2771418)
[»] chr3 (5 HSPs)
chr3 (171-233)||(17603853-17603915)
chr3 (157-233)||(11652392-11652468)
chr3 (174-233)||(45080402-45080461)
chr3 (174-233)||(46149728-46149787)
chr3 (174-223)||(17603277-17603326)
[»] chr5 (6 HSPs)
chr5 (162-233)||(2314045-2314110)
chr5 (174-233)||(1283394-1283453)
chr5 (171-233)||(1282027-1282089)
chr5 (173-233)||(9407348-9407408)
chr5 (173-233)||(16538880-16538940)
chr5 (189-233)||(19129464-19129508)
[»] chr8 (1 HSPs)
chr8 (174-233)||(28929944-28930003)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 14305298 - 14305188
Alignment:
Q  123 tagaatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  14305298 tagaatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttaggaaaggagatatgaaatattgaatg 14305199  T
Q  223 cccacattaag 233  Q
    | |||||||||    
T  14305198 cgcacattaag 14305188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 121 - 255
Target Start/End: Complemental strand, 48670264 - 48670133
Alignment:
Q  121 agtagaatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaa 220  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||| ||    
T  48670264 agtagaatatgatgctggtagaggatgtatcattaggaagaagacaagtctcgtttagaaaaga---tgatttttagaaaaggagatatgaaatattgaa 48670168  T
Q  221 tgcccacattaaggcctttttcggtaggcgagaaa 255  Q
    || ||||||||||| |||||| |||||||||||||    
T  48670167 tgtccacattaaggtcttttttggtaggcgagaaa 48670133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 23900502 - 23900413
Alignment:
Q  144 gatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||||||| |  |||||||||||||| | ||||||||| |||| ||||||||| ||||||||||||||||||| |||  ||||||||||    
T  23900502 gatgtatcattgagaagaagacaagtcccatttaggaaacaagaggatttttagtaaaggagatatgaaatatttaatatccacattaag 23900413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 47719596 - 47719658
Alignment:
Q  171 tcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| | |||| ||||||||||    
T  47719596 tcgtttaggaaataagaggatttttaggaaaggagatatgaaatactgaatgtccacattaag 47719658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 47719062 - 47719003
Alignment:
Q  174 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||||||| | || ||||||||| ||| |||||||| ||||||||||||||||||||||    
T  47719062 tttaggaaacaggaggatttttaggaaatgagatatggaatattaaatgcccacattaag 47719003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 47968067 - 47967960
Alignment:
Q  126 aatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgccc 225  Q
    ||||||||||||||| | ||||||| | |  |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  47968067 aatatggtgctggtacatgatgtataattgtgaagaagacaagtctcgtttaggaaacaagaagatttttaggaaaggagatatgaaatattaaatgccc 47967968  T
Q  226 acattaag 233  Q
    ||| ||||    
T  47967967 acaataag 47967960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 24992175 - 24992068
Alignment:
Q  126 aatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgccc 225  Q
    |||||| |||||||| ||||| ||||| |  |||||||||||||| | ||||||||| || | ||||||||  ||||||||||||||||| | |||| ||    
T  24992175 aatatgatgctggtacaggatatatcattgagaagaagacaagtcccatttaggaaacaaaaggatttttatgaaaggagatatgaaatacttaatgtcc 24992076  T
Q  226 acattaag 233  Q
    ||||||||    
T  24992075 acattaag 24992068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 37577538 - 37577600
Alignment:
Q  171 tcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    |||||||||||| |||| ||| ||||| ||||||||||||||||| ||||||  |||||||||    
T  37577538 tcgtttaggaaacaagaggatctttaggaaaggagatatgaaatactaaatgttcacattaag 37577600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 29512993 - 29513100
Alignment:
Q  126 aatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgccc 225  Q
    |||||| |||||||||||||||||| | |  ||||||||||| ||| |||||||||  |||| ||| ||||| ||||||||||||||||| ||||||||     
T  29512993 aatatgatgctggtagaggatgtataattgtgaagaagacaaatctagtttaggaatcaagaggatctttaggaaaggagatatgaaatactaaatgcct 29513092  T
Q  226 acattaag 233  Q
    ||| ||||    
T  29513093 acaataag 29513100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 36238624 - 36238683
Alignment:
Q  174 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||||||| |||| ||||||||| ||||||||||||||||| | |||||| ||||||||    
T  36238624 tttaggaaataagaggatttttaggaaaggagatatgaaatacttaatgcctacattaag 36238683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 55976324 - 55976265
Alignment:
Q  174 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||| ||| |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  55976324 tttagaaaacaagaggatttttaggaaaggagatatgaaatattaaatgcccacattaag 55976265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 37273311 - 37273249
Alignment:
Q  171 tcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||| |||||    
T  37273311 tcgtttaggaaacaagaggatttttaggaaaggagatatgaaatactaaatgcccacgttaag 37273249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 45920462 - 45920402
Alignment:
Q  173 gtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    |||||||||| |||| ||||||||| ||||||||||||||||| ||| |||||||||||||    
T  45920462 gtttaggaaacaagaggatttttaggaaaggagatatgaaatactaagtgcccacattaag 45920402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 55000846 - 55000786
Alignment:
Q  173 gtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||| ||| |||||||||    
T  55000846 gtttaggaaacaagatgatttttaggaaaggagatatgaaatactaagtgctcacattaag 55000786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 24551901 - 24551794
Alignment:
Q  126 aatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgccc 225  Q
    |||||| |||||||| | ||||||||| |  |||||||||||||| |  |||| ||| |||| ||||||||| ||||||||||||||||| | |||  ||    
T  24551901 aatatgatgctggtacaagatgtatcattgagaagaagacaagtcccaattagaaaacaagaggatttttaggaaaggagatatgaaatacttaatatcc 24551802  T
Q  226 acattaag 233  Q
    ||||||||    
T  24551801 acattaag 24551794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 55976850 - 55976909
Alignment:
Q  174 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||||||| |||| ||||||||| ||||||||||||||||| | |||| ||||||||||    
T  55976850 tttaggaaataagaggatttttaggaaaggagatatgaaatactgaatgtccacattaag 55976909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 2771418 - 2771317
Alignment:
Q  126 aatatggtgctggtagaggatgtatcactaggaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgccc 225  Q
    ||||||||| ||||  | ||||||||| |  ||||||||  |||||||||||||||| ||||  | |||||| || | | |||||||||||| |||||||    
T  2771418 aatatggtgttggtgcaagatgtatcattgagaagaagatgagtctcgtttaggaaacaagagaaattttaggaatgtaaatatgaaatattgaatgccc 2771319  T
Q  226 ac 227  Q
    ||    
T  2771318 ac 2771317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 17603853 - 17603915
Alignment:
Q  171 tcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  17603853 tcgtttaggaaataagaggatttttaggaaaggagatatgaaatactaaatgtccacattaag 17603915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 11652468 - 11652392
Alignment:
Q  157 gaagaagacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    |||||||||||||| | ||||||||| || | ||||||||| ||||||||||||||||| | |||| ||||||||||    
T  11652468 gaagaagacaagtcccatttaggaaacaaaaggatttttaggaaaggagatatgaaatacttaatgtccacattaag 11652392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 45080461 - 45080402
Alignment:
Q  174 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||| |||||| ||||||||    
T  45080461 tttaggaaacaagaggatttttaggaaaggagatatgaaatattgaatgcctacattaag 45080402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 46149787 - 46149728
Alignment:
Q  174 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||| |||||| ||||||||    
T  46149787 tttaggaaacaagaggatttttaggaaaggagatatgaaatattgaatgcctacattaag 46149728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 17603326 - 17603277
Alignment:
Q  174 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgc 223  Q
    ||||| ||| |||| ||||||||| |||||||||||||||||||||||||    
T  17603326 tttagaaaacaagaggatttttaggaaaggagatatgaaatattaaatgc 17603277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 2314110 - 2314045
Alignment:
Q  162 agacaagtctcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    |||||||||||||||||||||||||||||||||||  |||||      ||||||||||||||||||||||||    
T  2314110 agacaagtctcgtttaggaaagaagatgatttttacgaaagg------gaaatattaaatgcccacattaag 2314045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 1283394 - 1283453
Alignment:
Q  174 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||| ||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||    
T  1283394 tttagaaaacaagaggatttttaggaaaggagatatgaaatattaaatgtccacattaag 1283453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 1282089 - 1282027
Alignment:
Q  171 tcgtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| | |||| ||||||||||    
T  1282089 tcgtttaggaaataagaggatttttaggaaaggagatatgaaatactgaatgtccacattaag 1282027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 9407408 - 9407348
Alignment:
Q  173 gtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    |||||||||| |||| ||||||||| ||||||||||||||||| ||| || ||||||||||    
T  9407408 gtttaggaaacaagaggatttttaggaaaggagatatgaaatactaagtgtccacattaag 9407348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 16538880 - 16538940
Alignment:
Q  173 gtttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||||||||  ||| ||||||||  ||||||||||||||||| ||||||||||| |||||    
T  16538880 gtttaggaaacgagaggatttttaataaaggagatatgaaatactaaatgcccacgttaag 16538940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 19129464 - 19129508
Alignment:
Q  189 gatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||    
T  19129464 gatttttaggaaaggagatatgaaatactaagtgcccacattaag 19129508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 28930003 - 28929944
Alignment:
Q  174 tttaggaaagaagatgatttttagaaaaggagatatgaaatattaaatgcccacattaag 233  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||| |||||| ||||||||    
T  28930003 tttaggaaacaagaggatttttaggaaaggagatatgaaatattgaatgcctacattaag 28929944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University