View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1293_low_37 (Length: 336)
Name: NF1293_low_37
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 324
Target Start/End: Complemental strand, 20253670 - 20253375
Alignment:
| Q |
30 |
tatgcaccatgaaatatcatattttgggttgtatcaa-ggtaacagtctagagaagataaaaacatacaatatttcatattttataaaattttaaaatgt |
128 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20253670 |
tatgcaccatgatatatcatattttgggttgtatcaacggtaacagtctagagaagacaaaaacatacaatatttcatattttatacaattttaaaatgt |
20253571 |
T |
|
| Q |
129 |
taaagtgatttgtcacgaacacaatgtcttaaatctaaaatttgatatttaactacctatcttgcatatacacctagccacctttctctcttgtaaccct |
228 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20253570 |
ttaagtgatttgtcacgaacactatgtcttaaatctaaaatttgatatttaactacctatcttgcaaatacacctagccacctttctctcttgtaaccct |
20253471 |
T |
|
| Q |
229 |
agttctttcttcctcatccatnnnnnnngtagggattggaaaacgggttaggcccaatatgttgacccgtttgacctgacgtttaggcgttatatt |
324 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20253470 |
agttctttcttcctcgtccataaaaaaagtagggattggaaaacgggttaggcccaatatgttgacccgtttgacctgacgtttagttgttatatt |
20253375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 324
Target Start/End: Complemental strand, 20433090 - 20432795
Alignment:
| Q |
30 |
tatgcaccatgaaatatcatattttgggttgtatcaa-ggtaacagtctagagaagataaaaacatacaatatttcatattttataaaattttaaaatgt |
128 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20433090 |
tatgcaccatgatatatcatattttgggttgtatcaatggtaacagtctagagaagataaaaacatacaatatttcatattttatacaattttaaaatgt |
20432991 |
T |
|
| Q |
129 |
taaagtgatttgtcacgaacacaatgtcttaaatctaaaatttgatatttaactacctatcttgcatatacacctagccacctttctctcttgtaaccct |
228 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20432990 |
taaagtgatttgtcacgaacactatgtcttaaatctaaaatttgatatttagctacctatcttgcatatacacctagccacctttctctcttgtaatcct |
20432891 |
T |
|
| Q |
229 |
agttctttcttcctcatccatnnnnnnngtagggattggaaaacgggttaggcccaatatgttgacccgtttgacctgacgtttaggcgttatatt |
324 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
20432890 |
agttctttcttcctcgtccataaaaaaagcagggattggaaaacgggttaggcccaatatgttgacccgtttgacatgacgtttaggcattatatt |
20432795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 324
Target Start/End: Complemental strand, 20373026 - 20372730
Alignment:
| Q |
30 |
tatgcaccatgaaatatcatattttgggttgtatcaagg-taacagtctagagaagataaaaacatacaatatttcatattttataaaattttaaaatgt |
128 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20373026 |
tatgcaccatgatatatcatattttgggttgtatcaagggtaacagtctagagaagataaaaacatacaatatttcatattttatacaattttaaaatgt |
20372927 |
T |
|
| Q |
129 |
taaagtgatttgtcacgaacacaatgtcttaaatctaaaatttgatatttaactacctatcttgcatatacacctagccacctttctctcttgtaaccct |
228 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| | | |
|
|
| T |
20372926 |
taaaatgatttgtcacgaacactatgtcttaaatctaaaatttgatatttaactacctatcttgcatatactcctatccacctttctctcttgtaatcgt |
20372827 |
T |
|
| Q |
229 |
agttctttcttcctcatccat-nnnnnnngtagggattggaaaacgggttaggcccaatatgttgacccgtttgacctgacgtttaggcgttatatt |
324 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20372826 |
agttctttcttcctcatccataaaaaaaagcagggattggaaaacgggttaggcccaatatgttgacccgtttgacatgacgtttaggcgttatatt |
20372730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 30 - 322
Target Start/End: Original strand, 20293673 - 20293965
Alignment:
| Q |
30 |
tatgcaccatgaaatatcatattttgggttgtatcaagg-taacagtctagagaagataaaaacatacaatatttcatattttataaaattttaaaatgt |
128 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
20293673 |
tatgctccatgaaatatcgtattttgggttgtatcaagggtaacagtctagagaagacaaaaacatacaatatttcatattttatacagttttaaaatgt |
20293772 |
T |
|
| Q |
129 |
taaagtgatttgtcacgaacacaatgtcttaaatctaaaatttgatatttaactacctatcttgcatatacacctagccacctttctctcttgtaaccct |
228 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20293773 |
taaagtgatttgtcacacacactatgtcttaaatctaaaatttcatatttttctacctatcttgcacatacacctagccacctttctctcttgtaaccct |
20293872 |
T |
|
| Q |
229 |
agttctttcttcctcatccatnnnnnnngtagggattggaaaacgggttaggcccaatatgttgacccgtttgacctgacgtttaggcgttata |
322 |
Q |
| |
|
| || |||||||||| ||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
20293873 |
atttatttcttcctcgtccat-aaaaaagtagggatgggaaaacgggttaggccctataagttgacccgtttgacctaacgtttaggcgttata |
20293965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 20350407 - 20350194
Alignment:
| Q |
30 |
tatgcaccatgaaatatcatattttgggttgtatcaagg-taacagtctagagaagataaaaacatacaatatttcatattttataaaattttaaaatgt |
128 |
Q |
| |
|
||||| ||||||||||| |||| ||| ||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20350407 |
tatgctccatgaaatattgtattctggattgtatcaagggtaacagtctagaaaagacaaaaacatacaatatttcatattttatacaattttaaaatgt |
20350308 |
T |
|
| Q |
129 |
taaagtgatttgtcacgaacacaatgtcttaaatctaaaatttgatatttaactacctatcttgcatatacacctagccacctttctctcttgtaaccct |
228 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| |||||| ||| |||||||| | ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
20350307 |
taaagtgatttgtcacacacactatgtcttaaatctaaaatttcatatttttctatctatcttgaacatacacctaaccacctttctctcctgtaaccct |
20350208 |
T |
|
| Q |
229 |
agttctttcttcct |
242 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20350207 |
agttctttcttcct |
20350194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 44012919 - 44012851
Alignment:
| Q |
36 |
ccatgaaatatcatattttgggttgtatcaa-ggtaacagtctagagaagataaaaacatacaatattt |
103 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||| | || | |||||||||| |||||| |
|
|
| T |
44012919 |
ccatgaaatatcatgttttgggttgtatcaagggtaacagtctaaaaaatacaaaaacatacgatattt |
44012851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 3993687 - 3993745
Alignment:
| Q |
46 |
tcatattttgggttgtatcaagg-taacagtctagagaagataaaaacatacaatattt |
103 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
3993687 |
tcatgttttgagttgtatcaagggtaacagtctagagaacacaaaaacatacaatattt |
3993745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University