View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_40 (Length: 331)
Name: NF1293_low_40
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_40 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 3221232 - 3220911
Alignment:
| Q |
10 |
aagaatattgatctaagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
109 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3221232 |
aagaacattgatctaagtggaaaagtagtggtgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
3221133 |
T |
|
| Q |
110 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3221132 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
3221033 |
T |
|
| Q |
210 |
caaagaatacataaaatcaacctacaatccatcagcaacattgttattcaaaggaacagtaattggtgattccctcgcaccttctgttgtttacttttct |
309 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||| |||||| |
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| T |
3221032 |
caaagaatacataaaatcaacttacaatccatcagcaacattgatattcaaaggaacagtaattggtgattctttagctccttctgttgtttcattttct |
3220933 |
T |
|
| Q |
310 |
tcaagaggaccaagccaagaaa |
331 |
Q |
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|||||||||||||||||||||| |
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| T |
3220932 |
tcaagaggaccaagccaagaaa |
3220911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 3231465 - 3231144
Alignment:
| Q |
10 |
aagaatattgatctaagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
109 |
Q |
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||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||| |||||||||| ||||| | |
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| T |
3231465 |
aagaacatcgatctaagtggaaaagtagtgttgtgtgatatcggaggacgtgttccaagcactgtgaaaggacaagaagttttaaattcaggtggtgtag |
3231366 |
T |
|
| Q |
110 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
209 |
Q |
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| |||| |||| ||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||| || |||||||| ||||||||||||||| |
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| T |
3231365 |
cagtgattcttgtaaactcagaaagtgatggtttcagcacttttgctactgctcatgttctacctgcggttgaagtgagttacaaagctggtttaacaat |
3231266 |
T |
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| Q |
210 |
caaagaatacataaaatcaacctacaatccatcagcaacattgttattcaaaggaacagtaattggtgattccctcgcaccttctgttgtttacttttct |
309 |
Q |
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|||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||| |||||| |
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| T |
3231265 |
caaagattacataaactcaacctacaatccaacagcaacattgatattcaaaggaacagtaattggtgattctttagctccttctgttgtttcattttct |
3231166 |
T |
|
| Q |
310 |
tcaagaggaccaagccaagaaa |
331 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
3231165 |
tcaagaggaccaagccaagaaa |
3231144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 3226214 - 3225896
Alignment:
| Q |
10 |
aagaatattgatctaagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
109 |
Q |
| |
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||||| |||||| |||| |||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||| ||| | | |
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| T |
3226214 |
aagaacattgatttaagcggaaaagtagtgctgtgtgatgt---aggaaatgtctcaagtattgtgaaaggacaagaagttctaaattcaggtggtatag |
3226118 |
T |
|
| Q |
110 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
209 |
Q |
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| ||||| ||||||||||||||| ||||||||||||| |||| ||||| |||||||||| ||||||| ||| || ||||||| ||||||||||||||||| |
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| T |
3226117 |
caatgatacttgcaaattcagaagcacttggtttcagtacttttgctattgctcatgttctacctgcagttgaagtgagttatgcagctggtttaacaat |
3226018 |
T |
|
| Q |
210 |
caaagaatacataaaatcaacctacaatccatcagcaacattgttattcaaaggaacagtaattggtgattccctcgcaccttctgttgtttacttttct |
309 |
Q |
| |
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|||| |||||||||||||| |||||||| ||||||||||| |||| |||||||| ||||||||||||| | || ||||||||||||||||||||| |
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| T |
3226017 |
caaatcttacataaaatcaacatacaatccgacagcaacattgatatttaaaggaacgataattggtgattctttagctccttctgttgtttacttttct |
3225918 |
T |
|
| Q |
310 |
tcaagaggaccaagccaagaaa |
331 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
3225917 |
tcaagaggaccaagccaagaaa |
3225896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 3240264 - 3239947
Alignment:
| Q |
10 |
aagaatattgatctaagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | || | | ||||||||| |||||||||||||||||||||||||| || ||||| | |
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| T |
3240264 |
aagaatattgatctaagtggaaaagttgtgttgtgtgatataggtgaagatgtttcaacctttgtgaaaggacaagaagttctaaatgcaaatggtgtag |
3240165 |
T |
|
| Q |
110 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
209 |
Q |
| |
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| |||| |||| ||| ||||||| |||||||||||||| |||||||||||||||| | || || ||| || ||||||| ||||||||||||||||| |
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| T |
3240164 |
cagtgattcttgtaaactcagaaagtgatggtttcagcacttttgctactgctcatgttctgccagcagttgaagtgagttatgcagctggtttaacaat |
3240065 |
T |
|
| Q |
210 |
caaagaatacataaaatcaacctacaatccatcagcaacattgttattcaaaggaacagtaattggtgattccctcgcaccttctgttgtttacttttct |
309 |
Q |
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|||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||||| |
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| T |
3240064 |
caaagattacattaactcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattctttagctccttctgttgtttcattttct |
3239965 |
T |
|
| Q |
310 |
tcaagaggaccaagccaa |
327 |
Q |
| |
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|||||||||||||||||| |
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| T |
3239964 |
tcaagaggaccaagccaa |
3239947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 3178576 - 3178893
Alignment:
| Q |
10 |
aagaatattgatctaagtggaaaagtagtgttgtgtgatgtcggaggacgtgtttcaactattgtgaaaggacaagaagttctaaattcaggcggtgttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | || | | ||||||||| |||||||||||||||||||||||||| || ||||| | |
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| T |
3178576 |
aagaatattgatctaagtggaaaagttgtgttgtgtgatataggtgaagatgtttcaacctttgtgaaaggacaagaagttctaaatgcaaatggtgtag |
3178675 |
T |
|
| Q |
110 |
ctatgatccttgcaaattcagaaacacttggtttcagcacttctgctactgctcatgttttacctgcggttcaactgagttacgcagctggtttaacaat |
209 |
Q |
| |
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| |||| |||| ||| ||||||| |||||||||||||| |||||||||||||||| | || || ||| || | ||||| ||||||||||||||||| |
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| T |
3178676 |
cagtgattcttgtaaactcagaaagtgatggtttcagcacttttgctactgctcatgttctgccagcagttgaagtaagttatgcagctggtttaacaat |
3178775 |
T |
|
| Q |
210 |
caaagaatacataaaatcaacctacaatccatcagcaacattgttattcaaaggaacagtaattggtgattccctcgcaccttctgttgtttacttttct |
309 |
Q |
| |
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|||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |||||| |
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| T |
3178776 |
caaagattacattaactcaacctacaatccaacagcaacattgttattcaaaggaacagtaattggtgattctttagctccttctgttgtttcattttct |
3178875 |
T |
|
| Q |
310 |
tcaagaggaccaagccaa |
327 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3178876 |
tcaagaggaccaagccaa |
3178893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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