View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_42 (Length: 325)
Name: NF1293_low_42
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 24949697 - 24950010
Alignment:
| Q |
1 |
atctagataaccataagaaatggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatac |
100 |
Q |
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| T |
24949697 |
atctagataaccataagaaatggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatac |
24949796 |
T |
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| Q |
101 |
ttcattattttgcataacctgcagtatattgaggagatagctataatgatatacagaatcagagtgaaaaatgaaatttaaaatcaaaagagaatggtaa |
200 |
Q |
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| T |
24949797 |
ttcattactttgcataacctgcagtatattgaggagatagctataatgatatacagaatcagagagaaaaatgaaatttaaaatcaaaagagaatggtaa |
24949896 |
T |
|
| Q |
201 |
atgagttttaagatctcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagacttgtaagtgttaaagtcattgtaa |
300 |
Q |
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| T |
24949897 |
atgagttttaagatctcatcattgagctagaccagaatgatcaaagccgagagctatgggcgaaatagccagagacttgtaagtgttaaagtcattgtaa |
24949996 |
T |
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| Q |
301 |
gttgacttgtctgt |
314 |
Q |
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| T |
24949997 |
gttgacttgtctgt |
24950010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 24366741 - 24366802
Alignment:
| Q |
39 |
aggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatac |
100 |
Q |
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| T |
24366741 |
aggcctgaatatgagcagtgtcgattactgcattaactaataactacctaattacatgatac |
24366802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 3000660 - 3000595
Alignment:
| Q |
210 |
aagatctcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagact |
277 |
Q |
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|||| |||||| |||||||||||| ||| ||| || ||||| |||||||||||||||||||||||| |
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| T |
3000660 |
aagagctcatcgttgagctagaccggaaagatgaacaccgag--ctaagggcgaaatagcccgagact |
3000595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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