View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_44 (Length: 316)
Name: NF1293_low_44
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 48523332 - 48523610
Alignment:
| Q |
30 |
gacgacatggatggtgtagcatatacaagcaacaatgaaattcatttgagtgcaaggtatgttaatagctatggtggtgatttgagaaaggagattacag |
129 |
Q |
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| T |
48523332 |
gacgacatggatggtgtagcatatacaagcaacaatgaaattcatttgagtgcaaggtatgttaatagctatgggggtgatttgagaaaggagattacag |
48523431 |
T |
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| Q |
130 |
gggtattgtatcatgaaatgactcatgtatggcagtggaatggtaatggacaagctaatggtggattaattgaaggtatagcagattatgtaagattgaa |
229 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48523432 |
gggtattgtatcatgaaatgacacatgtatggcagtggaatggtaatggtcaagctaatggtggattaattgaaggtatagcagattatgtaagattgaa |
48523531 |
T |
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| Q |
230 |
agctaattatgcaccaagtcattgggtcaaaccagggcaaggaaataagtgggaccaaggttatgatgcaacagctagg |
308 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
48523532 |
agctaattatgcacctagtcattgggtcaaaccagggcaaggaaataagtgggaccaaggttatgatgtaactgctagg |
48523610 |
T |
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