View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_49 (Length: 276)
Name: NF1293_low_49
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 5550019 - 5549753
Alignment:
| Q |
1 |
ccaaacatgacctagataattatactgaaaacttaggaaatgaagataaaagatgattaacttactaagtgcttgagtcactctccttttgtctggtgtt |
100 |
Q |
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| T |
5550019 |
ccaaacatgacctagataattatactgaaaacttaggaaatgaagataaaagatgattaacttactaagtgcttgagtcactctccttttgtctggtgtt |
5549920 |
T |
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| Q |
101 |
gtaaatttagtaggtgtcccagtttttgctcgtccacatgtataacctggtccaggtgctttcagggtgaaattttgcggcagtttgacagttttattgg |
200 |
Q |
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| T |
5549919 |
gtaaatttagtaggtgtcccagtttttgctcgtccacatgtataacctggtccaggtgctttcagggtgaaattttgcggcagtttgacagttttattgg |
5549820 |
T |
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| Q |
201 |
tcgtgccagctctaccaacgataacctgaaatgacgcaactgcatttgttggatcctgtgcctatga |
267 |
Q |
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| T |
5549819 |
tcgtgccagctctaccaacaataacctgaaatgacgcaactgcatttgttggatcctgtgcccatga |
5549753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 5540772 - 5541030
Alignment:
| Q |
1 |
ccaaacatgacctagataattatactgaaaacttaggaaatgaagataaaagatgattaacttactaagtgcttgagtcactctccttttgtctggtgtt |
100 |
Q |
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| T |
5540772 |
ccaaacatgacctagaaaattatactgaaaacttaggaaatgaacataagagatgattaacttactaagtgcttgagtcactctacttttgtctggtgtt |
5540871 |
T |
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| Q |
101 |
gtaaatttagtaggtgtcccagtttttgctcgtccacatgtataacctggtccaggtgctttcagggtgaaattttgcggcagtttgacagttttattgg |
200 |
Q |
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| T |
5540872 |
atgaatctagtaggtttcacaatttttgctggcccacatgtataacctggtccaggtgctttcaaggtgaaatttttcggcagtttgacagttttgttag |
5540971 |
T |
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| Q |
201 |
tcgtgccagctctaccaacgataacctgaaatgacgcaactgcatttgttggatcctgt |
259 |
Q |
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| T |
5540972 |
ttgtaccagctctatcgacgctgacttgaaatgctgaaaccgcatttattggatcctgt |
5541030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 219
Target Start/End: Complemental strand, 5007408 - 5007246
Alignment:
| Q |
57 |
ttaacttactaagtgcttgagtcactctccttttgtctggtgttgtaaatttagtaggtgtcccagtttttgctcgtccacatgtataacctggtccagg |
156 |
Q |
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| T |
5007408 |
ttaacttactgagtgcttgagtcactctccttttgtctggttgaataaactgagtaggtctcacaatttttgccggcccacaagtataaccgggtcccgg |
5007309 |
T |
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| Q |
157 |
tgctttcagggtgaaattttgcggcagtttgacagttttattggtcgtgccagctctaccaac |
219 |
Q |
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| T |
5007308 |
ggcattcaaggtgaagtttttaggcactttaacagttttgtttgtggttccggctctaccaac |
5007246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 24485077 - 24485017
Alignment:
| Q |
30 |
aacttaggaaatgaagat--aaaagatgattaacttactaagtgcttgagtcactctcctt |
88 |
Q |
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| T |
24485077 |
aacttaggaaatgaagataaaaaacatgattaatttacaaagtgtttgagttactctcctt |
24485017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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