View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_54 (Length: 269)
Name: NF1293_low_54
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 49 - 242
Target Start/End: Original strand, 17049049 - 17049239
Alignment:
| Q |
49 |
ttcccaactttaactcaggtacaaactctagcaaatatattgagatagttacatgttttcctatgctgaatatttcacataagtcttgcatttttgtttt |
148 |
Q |
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| T |
17049049 |
ttcccaactttaactcaggtacaaactctagcaaatatattgagatagttacatgttttcctatgctgaatatttcacataagtcttgcattt---tttt |
17049145 |
T |
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| Q |
149 |
tgtttaataaaggcgtagatatgctgaaatcgattttgtcactgtgtttggatgagctttgtcaaaaatgattttgaatgaacttgatattgtt |
242 |
Q |
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| T |
17049146 |
tgtttaataaaggcgtagatatgctgaaatcgattttgtcactgtgtttggatgagctttgtcaaaaatgattttgaatgaacttgattttgtt |
17049239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 17030711 - 17030895
Alignment:
| Q |
49 |
ttcccaactttaactcaggtacaaactctagcaaatatattgagatagttacatgttttcctatgctgaatatttcacataagtcttgcatttttgtttt |
148 |
Q |
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| T |
17030711 |
ttcccaactttaactcaggtacaaactctagcaaatatattgagatagttacatgttttcctatgctgaatatttcacataagtcttgcattt---tttt |
17030807 |
T |
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| Q |
149 |
tgtttaataaaggcgtagatatgctgaaatcgattttgtcactgtgtttggatgagctttgtcaaaaatgattttgaatgaacttgat |
236 |
Q |
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| T |
17030808 |
tgtttaataaaggcgtagatatgctgaaatcgattttgtcactgtgtntggatgagctttgtcaaaaatgattttgaatgaacttgat |
17030895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 16978839 - 16979023
Alignment:
| Q |
49 |
ttcccaactttaactcaggtacaaactctagcaaatatattgagatagttacatgttttcctatgctgaatatttcacataagtcttgcatttttgtttt |
148 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16978839 |
ttcccaactttaactcaggtacaaactctagcaaatatattgagatagttacatgttttcctatgctgaatatttcacataagtcttgcattt---tttt |
16978935 |
T |
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| Q |
149 |
tgtttaataaaggcgtagatatgctgaaatcgattttgtcactgtgtttggatgagctttgtcaaaaatgattttgaatgaacttgat |
236 |
Q |
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| T |
16978936 |
tgtttaataaaggcgtagatatgctgaaatcgattttgtcactgtgtatggatgagctttgtcaaaaatgattttgaatgaacttgat |
16979023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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