View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_58 (Length: 251)
Name: NF1293_low_58
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 5665306 - 5665546
Alignment:
| Q |
1 |
gagaggtttggtacaaaggagaggataaggggttatttttcgggagcagacggatatagctgcctaaagggagcaatagattgaggaggaggactttgac |
100 |
Q |
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| T |
5665306 |
gagaggtttggtacaaagaagagggtaaggggttatttt-cgggagcagacagatatagctgcctaaagggagcaatagattgaggaggaggactttgac |
5665404 |
T |
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| Q |
101 |
cagggaaaggaggaggagttcgacaatatcatggtcgaccagcatgacacttccgggtttggcccaaattttatgtgattatgcacttttcttatcacta |
200 |
Q |
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| T |
5665405 |
catggaaaggaggaggagtttgacaatatcatggtcgaccagcatgacacttccgggtttggcccaaattttatgtgattatgcacttttcttatcacta |
5665504 |
T |
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| Q |
201 |
atgtagttgtttttattttcatgtagttgttctaagaataat |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5665505 |
atgtagttgtttttattttcatgtagttgttctaaaaataat |
5665546 |
T |
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