View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_6 (Length: 664)
Name: NF1293_low_6
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 227 - 636
Target Start/End: Complemental strand, 14417732 - 14417319
Alignment:
| Q |
227 |
tttgatttgatgttcaaatattaccattttaagaaaaattgtgaacaagacacactttctcataggggcatcattgatctaaatcattgtaactcattgt |
326 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14417732 |
tttgatttgatgttaaaatattaccattttaagataaattgtgaacaagacgcactttctcataggggcatcattgatctaaatcattgtatctcattgt |
14417633 |
T |
|
| Q |
327 |
tttatgtttaagacatgaaaaatggaaagagcgatgatatttgaacatcaaaattgtgacaacttatatgacaatctattaaatcaagtg----nnnnnn |
422 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14417632 |
tttatgtttaagacataaaaaatggaaagagcgataatatttgaacattaaaattgtgacaacttatatgacaatctattaaatcaagtgtttttttttt |
14417533 |
T |
|
| Q |
423 |
nnnnngtgtgcaaagctaaaatcaagtgttaatttggttaaggnnnnnnnnnnnnnnnnnnnncacttgattttatctcatgagttgttttcagtgtaat |
522 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14417532 |
tttttgtgtacaaagctaaaatcaagtgttaatttggttaagagaaagaaagaaagaaaaaagcacttgattttatctcatgagttgttttcagtgtaat |
14417433 |
T |
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| Q |
523 |
tatcatagaagttgttaaaattttgatgctcaaatatcgttaatgaaatggaaaccactccccttttcttgtaatgtaatagcatgcatattggatctca |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14417432 |
tatcatagaagttgttaaaattttgatgctcaaatatcgttaatgaaatggaaatcactccccttttcttgtaatgtaatagcatgcatattggatctca |
14417333 |
T |
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| Q |
623 |
caaaagcactttat |
636 |
Q |
| |
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| T |
14417332 |
caaaagcactttat |
14417319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 14417990 - 14417787
Alignment:
| Q |
16 |
ataaggcaaaatctttgtgttggatgtgtggagctataccatgtaaagttactagttttgtttagaaacaattttaagatggaggggtagagtttgattt |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14417990 |
ataaggcgaaatctttgtgttggatgtgtggagctataccatgtaaagttactatttttgtttagaaacaattttaacatggaggggtagagtttgattt |
14417891 |
T |
|
| Q |
116 |
gatggttggatgggggagttaagaagcgaagtgataaaaatggcgaggtttcgatctcaactctaggtataactgtgatccttcgccatctttttgttta |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| |
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| T |
14417890 |
gatggttggatgagggagttaagaagcgaagtgataaaaatggcgaggtttcgatctcaactctaggtataactgtgaaccttcgctatctttttattta |
14417791 |
T |
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| Q |
216 |
aaaa |
219 |
Q |
| |
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|||| |
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| T |
14417790 |
aaaa |
14417787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 37428867 - 37428835
Alignment:
| Q |
363 |
atatttgaacatcaaaattgtgacaacttatat |
395 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
37428867 |
atatttgaacatcaaaattttgacaacttatat |
37428835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 35554388 - 35554446
Alignment:
| Q |
355 |
gagcgatgatatttgaacatcaaaattgtgacaacttatatgacaatctattaaatcaa |
413 |
Q |
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|||| |||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| |
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| T |
35554388 |
gagcaatgatatttgaacatcaaaatttcgacaatttatgtgacaatctataaaatcaa |
35554446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 15506047 - 15506100
Alignment:
| Q |
352 |
aaagagcgatgatatttgaacatcaaaattgtgacaacttatatgacaatctat |
405 |
Q |
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||||||| || ||||||||||||||||||| |||||| |||| ||||||||||| |
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| T |
15506047 |
aaagagcaatcatatttgaacatcaaaattttgacaatttatgtgacaatctat |
15506100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 13702404 - 13702364
Alignment:
| Q |
360 |
atgatatttgaacatcaaaattgtgacaacttatatgacaa |
400 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||| |
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| T |
13702404 |
atgatatttgaacatcaaaattttgacaacttatgtgacaa |
13702364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 13702227 - 13702272
Alignment:
| Q |
355 |
gagcgatgatatttgaacatcaaaattgtgacaacttatatgacaa |
400 |
Q |
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|||| ||||||||| |||||||||||| ||||||||||||| |||| |
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| T |
13702227 |
gagcaatgatatttcaacatcaaaattttgacaacttatataacaa |
13702272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 412
Target Start/End: Complemental strand, 32692787 - 32692737
Alignment:
| Q |
362 |
gatatttgaacatcaaaattgtgacaacttatatgacaatctattaaatca |
412 |
Q |
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||||||||||||| |||||| |||||| |||||||||||| ||| |||||| |
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| T |
32692787 |
gatatttgaacattaaaattttgacaatttatatgacaatttataaaatca |
32692737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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