View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1293_low_67 (Length: 213)
Name: NF1293_low_67
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_67 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 39897873 - 39897682
Alignment:
| Q |
12 |
ttctttacatgttttcatttctcgtaatttgttaaaccacaagtttttgtcctttcctaaccatttgaaattataggtttctgctatttgtaagttatgg |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39897873 |
ttctttacatgttttcatttcttgtaatttgttaaaccacaagtttgtgtcctttcctaaccatttgaaattataggtttctgctatttgtaagttatgg |
39897774 |
T |
|
| Q |
112 |
ttagctattgattttttgttacatgctgttctgcaaatttctgactgtaaaaagtgctttgttcagatattcaccttagacataccttcatc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39897773 |
ttagctattgattttttgttacatgctgttctgcaaatttctgactgtaaaaagtgctttgttcagatattcaccttagacataccttcatc |
39897682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 39874757 - 39874578
Alignment:
| Q |
12 |
ttctttacatgttttcatttctcgtaatttgttaaaccacaagtttttgtcctttcctaaccatttgaaattataggtttctgctatttgtaagttatgg |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||| ||||||| |||| |||| ||||| |
|
|
| T |
39874757 |
ttctttatatgttttcatttctcgtaatttgttaaaccgcaagtttgtgccctttcctaaccattttcaattatgtgtttctgatattcataaggtatgg |
39874658 |
T |
|
| Q |
112 |
ttagctattgattttttgttacatgctgttctgcaaatttctgactgtaaaaagtgctttgttcagatattcaccttaga |
191 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| || |||||||||| || |||||||||||||||| |||||| ||||| |
|
|
| T |
39874657 |
ttagctatcaattttttgttacatactgttcttcacatttctgacttaaataagtgctttgttcagacattcactttaga |
39874578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 39882885 - 39882692
Alignment:
| Q |
12 |
ttctttacatgttttcatttctcgtaatttgttaaaccacaagtttttgtcctttcctaaccatttgaaattataggtttctgctatttgtaagttatgg |
111 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||| ||||||| ||||| |||| | ||||| ||||| | |||||||||||| ||| ||||| |
|
|
| T |
39882885 |
ttctgtacatgtttttatttctcataatttgttaaactgcaagtttgtgtccactcctgagcatttaaaattgtttgtttctgctattagtatagtatgg |
39882786 |
T |
|
| Q |
112 |
ttagctattgattttttgttacatgctgttctgcaaatttctgactgtaaaaagtgctttgttcagatattcaccttagaca--taccttcatc |
203 |
Q |
| |
|
|||| |||||||||| | ||||| ||||||||||| |||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
39882785 |
ttagttattgattttctattacacgctgttctgcacatttttgactttaacaagtgctttgttcagacattcaccttagacaattaccttcatc |
39882692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 39890255 - 39890205
Alignment:
| Q |
107 |
tatggttagctattgattttttgttacatgctgttctgcaaatttctgact |
157 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39890255 |
tatgattagctattgattttttgttacatgctgttctgcacatttctgact |
39890205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University