View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1293_low_7 (Length: 582)

Name: NF1293_low_7
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1293_low_7
NF1293_low_7
[»] chr2 (3 HSPs)
chr2 (9-430)||(18911818-18912239)
chr2 (13-224)||(18908034-18908244)
chr2 (12-149)||(18919463-18919600)
[»] chr7 (11 HSPs)
chr7 (9-158)||(19886144-19886293)
chr7 (256-446)||(19781686-19781882)
chr7 (257-435)||(19350181-19350360)
chr7 (362-446)||(19781937-19782025)
chr7 (12-211)||(19723835-19724036)
chr7 (256-309)||(19724195-19724248)
chr7 (94-238)||(19781446-19781585)
chr7 (251-336)||(19885887-19885972)
chr7 (257-372)||(19884433-19884548)
chr7 (166-220)||(19350442-19350496)
chr7 (397-448)||(19724283-19724334)
[»] chr3 (3 HSPs)
chr3 (9-238)||(12733225-12733453)
chr3 (255-445)||(32576874-32577064)
chr3 (9-184)||(32577214-32577387)
[»] scaffold0464 (1 HSPs)
scaffold0464 (9-238)||(9306-9534)
[»] scaffold0479 (1 HSPs)
scaffold0479 (107-238)||(3402-3532)
[»] chr6 (1 HSPs)
chr6 (9-148)||(14750745-14750884)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Complemental strand, 18912239 - 18911818
Alignment:
9 atcataggaccacaacctcaacttcaagcacatctggcattaaggatggtcggtgcacaatggcaagaagaaaggggaaacgagtcttattcgagctaca 108  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
18912239 atcataggaccacaacctcaacttcaagcacatctggcattatggatggtcggtgcacaatggcaagaagaaaggggaaacgagtcttattggagctaca 18912140  T
109 ttttcttcggttctagtactcattttgtataagacgtttacgaccctcttgatgctttcttttgaacttctttgaaagtgtttgtagaaagttaccacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||| |||||||||    
18912139 ttttcttcggttctagtactcattttgtataagacgtttacgaccctcttgatgctttcttttgaacttctttgaaactg--tgtagaaatttaccacaa 18912042  T
209 aatatttgtgttgtttcacaactgtactctaata-tttttgtgaatatcatggttggatgatctttctttgacattttgtgtgaatttttccatggattt 307  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
18912041 aatatttgtgttgtttcacaaatgtactcttatattttttgtgaatatcatggttggatgatctttctttgacattttatgtgaatttttccatggattt 18911942  T
308 aaattgctctcgctatcaactattttcacccggtcgaactctattttatccgggagtgaagccatggtagagcgtgcaggtata-gtcaaggtgcatgta 406  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
18911941 aaattgctcttgttatcaactattttcacccggtcgaactctattttatccgggagtgaagccatggtagagcatgcaggtataggtcaaggtgcatgta 18911842  T
407 caagtacagggtcctcagcaacta 430  Q
    ||||||||||||||||||||||||    
18911841 caagtacagggtcctcagcaacta 18911818  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 18908244 - 18908034
Alignment:
13 taggaccacaacctcaacttcaagcacatctggcattaaggatggtcggtgcacaatggcaagaagaaag----gggaaacgagtcttattcgagctaca 108  Q
    |||||||||||||| ||||||||||||||||||| |||  |||||||| ||||  || ||| |||| |||    |||||| |||||||||| ||||||||    
18908244 taggaccacaacctaaacttcaagcacatctggcgttattgatggtcgatgcatgatagcaggaaggaagaaatgggaaaagagtcttattggagctaca 18908145  T
109 ttttcttcggttctagtactcattttgtataagacgtttacgaccctcttgatgctttcttttgaacttctttgaaagtgtttgtagaaagttaccacaa 208  Q
    |||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||   | |||||||||||||| |||||| |||||||      
18908144 ttttcttcagttttagtactcattttgtataagacgtttacaaccctcttgatccttttttttg---tactttgaaagtgtttttagaaatttaccac-- 18908050  T
209 aatatttgtgttgttt 224  Q
    ||||||||||||||||    
18908049 aatatttgtgttgttt 18908034  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 18919600 - 18919463
Alignment:
12 ataggaccacaacctcaacttcaagcacatctggcattaaggatggtcggtgcacaatggcaagaagaaaggggaaacgagtcttattcgagctacattt 111  Q
    |||||||| |||||||||||||||||||||||||  |||  |||||||| |||   |||| | |||||||||||||| |||||||||| |||||||||||    
18919600 ataggaccgcaacctcaacttcaagcacatctggtgttattgatggtcgatgctggatggtaggaagaaaggggaaaagagtcttattggagctacattt 18919501  T
112 tcttcggttctagtactcattttgtataagacgtttac 149  Q
    ||||| ||| ||||||||||||||||||||||||||||    
18919500 tcttcagttttagtactcattttgtataagacgtttac 18919463  T

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Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 19886293 - 19886144
Alignment:
9 atcataggaccacaacctcaacttcaagcacatctggcattaaggatggtcggtgcacaatggcaagaagaaaggggaaacgagtcttattcgagctaca 108  Q
    |||| |||||||||||||||||||||||||||||||||||||  || ||| | ||||  |||||| |||||||||| ||| |||||||||| || |||||    
19886293 atcacaggaccacaacctcaacttcaagcacatctggcattattgacggttgttgcaggatggcaggaagaaagggaaaaagagtcttattggatctaca 19886194  T
109 ttttcttcggttctagtactcattttgtataagacgtttacgaccctctt 158  Q
    |||||||| ||| |||||||||||||||||||||| |||||| |||||||    
19886193 ttttcttcagttttagtactcattttgtataagacatttacggccctctt 19886144  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 256 - 446
Target Start/End: Original strand, 19781686 - 19781882
Alignment:
256 catggttggatgatctttctttgacattttgtgtgaatttttccatggatttaaattgctctcgctatcaactatttt--cacccggtcgaactctattt 353  Q
    ||||||||||||||||||| ||| |||||| ||  ||||||||||| | |||||| || | | ||||| |||| ||||  ||||| |||||| |  ||||    
19781686 catggttggatgatctttccttggcattttttgcaaatttttccatagttttaaactgatattgctattaacttttttttcacccagtcgaatttcattt 19781785  T
354 tatccgggagtgaagccatggtagagcgtgcaggtatagtcaaggtgcatgtacaagtacag----ggtcctcagcaactaactttgatgtctgcac 446  Q
    ||||  | |||||||||||||||||| |||||||||| | |||||||||||||||| |||||    ||||||| |||||||||||||||||||||||    
19781786 tatctagcagtgaagccatggtagagggtgcaggtatgggcaaggtgcatgtacaattacagcgctggtcctcggcaactaactttgatgtctgcac 19781882  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 257 - 435
Target Start/End: Complemental strand, 19350360 - 19350181
Alignment:
257 atggttggatgatctttctttgacattttgtgtgaatttttccatggatttaaattgctctcgctatcaactattttcacccggtcgaactctattttat 356  Q
    |||||||||| |||||||||| ||||| | ||| ||||| ||| |||||||||||| ||||| || ||||||||||| ||||  || || ||||||||||    
19350360 atggttggataatctttcttttacattctctgttaatttgtccgtggatttaaatttctctctctgtcaactattttaacccaatcaaagtctattttat 19350261  T
357 ccgggagtgaagccatggtagagcgtgcaggtatag-tcaaggtgcatgtacaagtacagggtcctcagcaactaacttt 435  Q
    || | |||||||||||||||||| ||||| |||| |  ||||| | | ||| ||||||||||||||  | ||||||||||    
19350260 ccagtagtgaagccatggtagagggtgcatgtatggaccaaggcgaaggtaaaagtacagggtccttggaaactaacttt 19350181  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 362 - 446
Target Start/End: Original strand, 19781937 - 19782025
Alignment:
362 agtgaagccatggtagagcgtgcaggtatagtcaaggtgcatgtacaagtacag----ggtcctcagcaactaactttgatgtctgcac 446  Q
    |||||||||||||||||| |||||||||| | |||||||||||| |||||||||    ||||||  |||||||||||||||||||||||    
19781937 agtgaagccatggtagagggtgcaggtatgggcaaggtgcatgttcaagtacagcgctggtccttggcaactaactttgatgtctgcac 19782025  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 19723835 - 19724036
Alignment:
12 ataggaccacaacctcaacttcaagcacatctggcattaaggatggtcggt---gcacaatggcaagaagaaaggggaaacgagtcttattcgagctaca 108  Q
    ||||||||| ||||||||||||||| ||||||||| |||  |||||||  |   | |  |||| | ||||||||||  || ||| ||| || ||||| ||    
19723835 ataggaccagaacctcaacttcaagaacatctggcgttattgatggtcaataaaggaggatggtaggaagaaagggacaaagagactttttggagctgca 19723934  T
109 ttttcttcggttctagtactcattttgtataagacgtttacgaccctcttgatgctttcttttgaacttctttgaaagtgtttgtagaaagttaccacaa 208  Q
    |||||||| ||| ||| |||||||||||||||||  |||| | ||||||||||||  ||||||  | |||||| ||||| ||||| |||| |||||||||    
19723935 ttttcttcagttttaggactcattttgtataagatatttatggccctcttgatgc-ctcttttagatttctttcaaagtttttgtggaaatttaccacaa 19724033  T
209 aat 211  Q
    |||    
19724034 aat 19724036  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 19724195 - 19724248
Alignment:
256 catggttggatgatctttctttgacattttgtgtgaatttttccatggatttaa 309  Q
    |||||||||||||||||||||||||||||| || |||||||||| |||||||||    
19724195 catggttggatgatctttctttgacattttctgcgaatttttccttggatttaa 19724248  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 19781446 - 19781585
Alignment:
94 cttattcgagctacattttcttcggttctagtactcattttgtataagacgtttacgaccctcttgatgctttcttttgaacttctttgaaagtgtttgt 193  Q
    |||||| ||||| ||||||||| |||| |||||||||| |||||||||||  ||  | ||||||||||||  ||||||| ||||||||||||||| ||||    
19781446 cttattggagctgcattttctttggttttagtactcatgttgtataagac-attctggccctcttgatgc-ctcttttggacttctttgaaagtg-ttgt 19781542  T
194 agaaagttaccacaaaatatttgtgttgtttcacaactgtactct 238  Q
     |||| |||||||  |||||||||| |||||  |||| |||||||    
19781543 ggaaatttaccac--aatatttgtgatgttttgcaacagtactct 19781585  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 19885972 - 19885887
Alignment:
251 aatatcatggttggatgatctttctttgacattttgtgtgaatttttccatggatttaaattgctctcgctatcaactattttcac 336  Q
    |||| ||||||||||||  ||||||||| |||| | | |||||||||||  || ||||||||||||| ||||||||||||||||||    
19885972 aatagcatggttggatggcctttctttggcattatctatgaatttttcctagggtttaaattgctcttgctatcaactattttcac 19885887  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 372
Target Start/End: Complemental strand, 19884548 - 19884433
Alignment:
257 atggttggatgatctttctttgacattttgtgtgaatttttccatggatttaaattgctctcgctatcaactattttcacccggtcgaactctattttat 356  Q
    |||||||| | |||||||||||||||| | || |||||||| ||| | ||| ||||||||  ||||||||| ||||||||||  ||  |||| |||||||    
19884548 atggttgggttatctttctttgacattgtctgcgaatttttacatcgttttgaattgctcctgctatcaaccattttcacccaatcagactccattttat 19884449  T
357 ccgggagtgaagccat 372  Q
    || | |||||||||||    
19884448 ccagtagtgaagccat 19884433  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 19350496 - 19350442
Alignment:
166 tcttttgaacttctttgaaagtgtttgtagaaagttaccacaaaatatttgtgtt 220  Q
    ||||||| |||||||||||||||||||| |||| | |||||||||||||||||||    
19350496 tcttttggacttctttgaaagtgtttgtggaaattcaccacaaaatatttgtgtt 19350442  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 448
Target Start/End: Original strand, 19724283 - 19724334
Alignment:
397 ggtgcatgtacaagtacagggtcctcagcaactaactttgatgtctgcactt 448  Q
    |||||| ||||||||||||||| ||||||||||||| ||||| |||||||||    
19724283 ggtgcaggtacaagtacagggttctcagcaactaaccttgatttctgcactt 19724334  T

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Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 12733453 - 12733225
Alignment:
9 atcataggaccacaacctcaacttcaagcacatctggcattaaggatggtcggtgcacaatggcaagaagaaaggggaaacgagtcttattcgagctaca 108  Q
    ||||||||| ||||||||  |||||||||||  ||||| |||   ||||||| ||||  |||| |||||||||| | ||| ||| ||  || || || ||    
12733453 atcataggatcacaacctttacttcaagcactgctggcgttattaatggtcgatgcaagatggtaagaagaaagagaaaaagagactcgttggaactgca 12733354  T
109 ttttcttcggttctagtactcattttgtataagacgtttacgaccctcttgatgctttcttttgaacttctttgaaagtgtttgtagaaagttaccacaa 208  Q
    |||||||||||| |||||||||||||||| ||||| |||| |||| ||||||| | | |||||| |||||||||||||||||||| |||| || ||||||    
12733353 ttttcttcggttttagtactcattttgtaaaagacatttatgaccttcttgattcct-cttttggacttctttgaaagtgtttgtggaaatttgccacaa 12733255  T
209 aatatttgtgttgtttcacaactgtactct 238  Q
    ||||||||||||||||  ||||||||||||    
12733254 aatatttgtgttgttttgcaactgtactct 12733225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 255 - 445
Target Start/End: Complemental strand, 32577064 - 32576874
Alignment:
255 tcatggttggatgatctttctttgacattttgtgtgaatttttccatggatttaaattgctctcgctatcaactattttcacccggtcgaactctatttt 354  Q
    |||||||||||||||||||| ||  |||||| ||  ||||||||||  ||||||||||  ||||||||  |  |||||||| ||  ||||| || |||||    
32577064 tcatggttggatgatctttccttagcattttctgcaaatttttccacagatttaaattaatctcgctaatagttattttcagccactcgaattccatttt 32576965  T
355 atccgggagtgaagccatggtagagcgtgcaggtatag-tcaaggtgcatgtacaagtacagggtcctcagcaactaactttgatgtctgca 445  Q
    || | | |||||||||||||||||| || ||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
32576964 attcagtagtgaagccatggtagagggt-caggtatgggtcaaggtgcctgtacaagtacagggtcctcagcaactaactttgatttctgca 32576874  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 32577387 - 32577214
Alignment:
9 atcataggaccacaacctcaacttcaagcacatctggcattaaggatggtcggtgcacaatggcaagaagaaa-ggggaaacgagtcttattcgagctac 107  Q
    |||||||||| |  |||| |||||||||||| | ||||||||  |||||||| ||||| |||| | ||||||| ||  ||| ||| |||||| ||||| |    
32577387 atcataggacgatgaccttaacttcaagcacttttggcattattgatggtcgatgcacgatggtaggaagaaatggaaaaaagagacttattggagctgc 32577288  T
108 attttcttcggttctagtactcattttgtataagacgtttacgaccctcttgatgctttcttttgaacttctttgaa 184  Q
    ||||||||| ||| |||||||| | |||||||| || |||    ||||||||||||  ||||||| |||||||||||    
32577287 attttcttcagttttagtactcttgttgtataacacattt--tgccctcttgatgc-ctcttttggacttctttgaa 32577214  T

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Target: scaffold0464 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 9306 - 9534
Alignment:
9 atcataggaccacaacctcaacttcaagcacatctggcattaaggatggtcggtgcacaatggcaagaagaaaggggaaacgagtcttattcgagctaca 108  Q
    |||||||||  |||||||  |||||||| ||  ||||| |||  |||||||| ||||  |||| | |||||||| | ||| ||| ||| || || || ||    
9306 atcataggatgacaacctttacttcaagaactgctggcgttattgatggtcgatgcaagatggtaggaagaaagagaaaaagagacttgttggaactgca 9405  T
109 ttttcttcggttctagtactcattttgtataagacgtttacgaccctcttgatgctttcttttgaacttctttgaaagtgtttgtagaaagttaccacaa 208  Q
    |||||||||||| ||||||| |||||||| | ||| |||| |||||||||||| | | |||||| |||||||||||||||||||| |||| || ||||||    
9406 ttttcttcggttttagtactgattttgtaaatgacatttatgaccctcttgattcct-cttttggacttctttgaaagtgtttgtggaaatttgccacaa 9504  T
209 aatatttgtgttgtttcacaactgtactct 238  Q
    ||||||||||||||||  ||||||||||||    
9505 aatatttgtgttgttttgcaactgtactct 9534  T

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Target: scaffold0479 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 3402 - 3532
Alignment:
107 cattttcttcggttctagtactcattttgtataagacgtttacgaccctcttgatgctttcttttgaacttctttgaaagtgtttgtagaaagttaccac 206  Q
    |||||||||||||| |||||||||||||||| ||||| |||| |||| ||||||| | | |||||| |||||||||||||||||||| |||| || ||||    
3402 cattttcttcggttttagtactcattttgtaaaagacatttatgaccttcttgattcct-cttttggacttctttgaaagtgtttgtggaaatttgccac 3500  T
207 aaaatatttgtgttgtttcacaactgtactct 238  Q
    ||||||||||||||||||  ||||||||||||    
3501 aaaatatttgtgttgttttgcaactgtactct 3532  T

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Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 14750745 - 14750884
Alignment:
9 atcataggaccacaacctcaacttcaagcacatctggcattaaggatggtcggtgcacaatggcaagaagaaaggggaaacgagtcttattcgagctaca 108  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||  || | ||||  |||||| |||||||||| ||||||||||| || || |||||    
14750745 atcataggaccacaacctcaacttcaagcacatctgggattattgacagttgttgcaggatggcaggaagaaagggaaaacgagtctttttggatctaca 14750844  T
109 ttttcttcggttctagtactcattttgtataagacgttta 148  Q
    |||||||| ||| | |||||||||||||||||||| ||||    
14750845 ttttcttcagtttttgtactcattttgtataagacattta 14750884  T

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