View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1293_low_8 (Length: 574)
Name: NF1293_low_8
Description: NF1293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1293_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 196 - 559
Target Start/End: Original strand, 9194206 - 9194569
Alignment:
| Q |
196 |
tcatcccataaatccttaatcttaaggcataaatgatcgggagagatattttgttccacattaataagaggatgcttgatgattcaaggatggaaccaca |
295 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
9194206 |
tcatcccataagtccttaatcttaaggcataaatgatcgggagagatattttgttccacattaataagaggatgcttgacgatccaaggatggaaccaca |
9194305 |
T |
|
| Q |
296 |
tatttgtatctccatctccaaaaaatttggtgaaaccatcttttaacacatcaagagacttgaggattgcattccaaataggtgaacagtccttgctttt |
395 |
Q |
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|||||||||||||||| ||| || || ||||||||||||||| | |||||||||||||||||||||||||||||| || |||| ||||||| ||| |
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| T |
9194306 |
tatttgtatctccatcaacaattttttaggcgaaaccatcttttaaaatatcaagagacttgaggattgcattccaaattggcgaaccgtccttgatttg |
9194405 |
T |
|
| Q |
396 |
tatataaatatattacactcttttaagtatttatcggcaaggatagacacccataattttgtgtctgattgcttaagactccaaacaagttttcccaaca |
495 |
Q |
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|||||||| || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9194406 |
tatataaacattttaccctcttttaagtatttattggcaaggatagacacccataattttgtgtctgattgcttaagacaacaaacaagttttcccaaca |
9194505 |
T |
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| Q |
496 |
aagttgtgttttgttatcgagctggctgaaatcctacacctccaagcttcctatgttttgtgat |
559 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
9194506 |
aagttgtgttttgttatcatgctggctgaaatcctagacctccaagcttcctaggttttgtgat |
9194569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 207 - 553
Target Start/End: Complemental strand, 37501321 - 37500975
Alignment:
| Q |
207 |
atccttaatcttaaggcataaatgatcgggagagatattttgtt-ccacattaataagaggatgcttgatgattcaaggatggaaccacatatttgtatc |
305 |
Q |
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| T |
37501321 |
atccttaattttgaggcataaatgacgtggagatatattttgttaccacgctaataagaggatgtttgacgatccaaggatggatccacatatttgtatc |
37501222 |
T |
|
| Q |
306 |
tccatctccaaaaaatttggtgaaaccatcttttaacacatcaagagacttgaggattgcattccaaataggtgaaca-gtccttgctttttatataaat |
404 |
Q |
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||||||||| | || ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| || ||||||||| || ||| |
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| T |
37501221 |
tccatctccgttttgta-ggagaaaccatcttctaacacataaagagttttgaggattgcattccaaataggtgaacctgtttttgctttttctaaaaac |
37501123 |
T |
|
| Q |
405 |
atattacactcttttaagtatttatcggcaaggatagacacccataattttgtgtctgattgcttaagactccaaacaagttttcccaacaaagttgtgt |
504 |
Q |
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| T |
37501122 |
atattcccct-tttcaagtatttatcagcaaggatagacacccataacttcttgtctgattgcacgaaactccaaacaagttttcccaacaaagttgtgt |
37501024 |
T |
|
| Q |
505 |
tttgttatcgagctggctgaaatcctacacctccaagcttcctatgttt |
553 |
Q |
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||||| ||||| ||| |||| ||||| |||||||||||||||| |||| |
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| T |
37501023 |
tttgtagtcgagttggatgaactcctagacctccaagcttcctaggttt |
37500975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 9194041 - 9194143
Alignment:
| Q |
96 |
ataagagccggtgatatgtactttttgttttgtattctccgtttaaattgtctatccacacccaagtgtcagcaattaatgtaattatgg-tggtttcca |
194 |
Q |
| |
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|||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
9194041 |
ataagagccggtgatatgcactttttgttgtgtattcttcgtttaaattgtctatccacacccaagggtcagcaattaatgtaattatggttggtttcca |
9194140 |
T |
|
| Q |
195 |
ctc |
197 |
Q |
| |
|
||| |
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|
| T |
9194141 |
ctc |
9194143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 37501480 - 37501428
Alignment:
| Q |
115 |
actttttgttttgtattctccgtttaaattgtctatccacacccaagtgtcag |
167 |
Q |
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|||||||||| |||||| ||| |||||||| || |||||||||||||||||| |
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| T |
37501480 |
actttttgttgtgtattttccatttaaattatcgttccacacccaagtgtcag |
37501428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 196 - 440
Target Start/End: Complemental strand, 8989506 - 8989260
Alignment:
| Q |
196 |
tcatcccataaatccttaatcttaaggcataaatgatcgggagagatattttgttccacattaataagaggatgcttgatgattc-aaggatggaaccac |
294 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| | ||||||||| || |||||||||||||| ||||| | ||| ||||||||| |||| |
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| T |
8989506 |
tcatcccataaatccttaatcttaaggcataaatgatttggaaatatattttgtatcatattaataagaggatacttgacggttcaaaggatggagccac |
8989407 |
T |
|
| Q |
295 |
atatttgtatctccatctccaaaaaatttggtgaaaccatcttttaacacatcaagagacttgaggattgcattccaaataggtgaaca-gtccttgctt |
393 |
Q |
| |
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||| |||||||| ||||||||| | || | ||||||| | ||| ||||| ||| |||| ||||| || || ||||||| |||| ||| |||||| |
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| T |
8989406 |
ataattgtatcttcatctccaattttgtaggcggaaccatcatcaaacgcatcacgagttttgatgattgaatacctaataggtaaacatgtctttgctt |
8989307 |
T |
|
| Q |
394 |
tttatataaatatattacactcttttaagtatttatcggcaaggata |
440 |
Q |
| |
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||| | ||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
8989306 |
tttctgaaaatatattaccctctttcaagtatttatcggcaaggata |
8989260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 10405860 - 10405789
Alignment:
| Q |
115 |
actttttgttttgtattctccgtttaaattgtctatccacacccaagtgtcagcaattaatgtaattatggt |
186 |
Q |
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| T |
10405860 |
actttttgtcgtgtattctccatttaaattatctttccacacccaagtgtcagcagataaggtacttatggt |
10405789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 42347495 - 42347576
Alignment:
| Q |
103 |
ccggtgatatgtactttttgttttgtattctccgtttaaattgtctatccacacccaagtgtcagcaattaatgtaattatg |
184 |
Q |
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| T |
42347495 |
ccggtgttatgcattttttggtgtgtattctccatttaaattgtctttccacactcaaatgtcatcaattgatgtaaatatg |
42347576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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