View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1294-Insertion-1 (Length: 536)

Name: NF1294-Insertion-1
Description: NF1294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1294-Insertion-1
NF1294-Insertion-1
[»] chr1 (9 HSPs)
chr1 (8-429)||(12540855-12541275)
chr1 (286-401)||(12534973-12535092)
chr1 (294-345)||(47569740-47569791)
chr1 (478-536)||(12541275-12541333)
chr1 (294-358)||(28239767-28239831)
chr1 (411-454)||(12531936-12531979)
chr1 (42-101)||(12535197-12535256)
chr1 (298-344)||(14508386-14508432)
chr1 (8-68)||(12532769-12532829)
[»] chr2 (2 HSPs)
chr2 (77-190)||(36007875-36007987)
chr2 (294-336)||(16375795-16375837)
[»] chr6 (2 HSPs)
chr6 (301-360)||(384134-384193)
chr6 (42-89)||(384373-384420)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 8 - 429
Target Start/End: Original strand, 12540855 - 12541275
Alignment:
Q  8 caaacctgatcgtgctggttatcaatccatgaggggtggactgttcaaaggtgaaagagttaaggttgctagaaatgtggaagagttgagtttgtcattt 107  Q
    ||||||||||| |||| ||| ||||||| ||   |||||||| | ||| |||| || |||||| ||| | |||||  |||||||||||||||||  ||||    
T  12540855 caaacctgatcttgctagttgtcaatccgtggttggtggactatacaatggtggaacagttaaagttacaagaaagatggaagagttgagtttgagattt 12540954  T
Q  108 tccaatctttttcttggaa--cat-attactgaggttaattattatgattatatttatttcaagtgtgttcttgtttgaccttagcatgcctgataaaaa 204  Q
    ||   |  |||||| | ||  ||| |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||| ||    
T  12540955 tctgtttgttttctggaaaatcattattacttaggttaattattatgattatatttatttcatgtgtgttcttgcttgaccttagctttcctgataataa 12541054  T
Q  205 taataatttggtgctagctgtacaatacagaaatagtgatggatgttgcaaaggaaggacagaaggagctactt---gcctattgaatattctagattac 301  Q
    ||      |||  |||||||||| |||  ||||||  |||||||  | |||||||||||| ||||||||||| |   |||  | ||||||| ||||||||    
T  12541055 ta------tgggtctagctgtaccatattgaaataaggatggatccttcaaaggaaggacggaaggagctacgtcctgccggtggaatattgtagattac 12541148  T
Q  302 atgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctatagctttgcttccaagtgtgtgtactggaaaataataatgtttt 401  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| ||||||||||||  ||    
T  12541149 atgctttctagttttttaatttaaggaccatgcttctgcttttactttcacttctacatctttgcttccaagtgtgtgcactgcaaaataataatg-ctt 12541247  T
Q  402 aattaatgctattctaatttgatcatgt 429  Q
    ||||||||  ||||||||||| ||||||    
T  12541248 aattaatgtaattctaatttgttcatgt 12541275  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 401
Target Start/End: Complemental strand, 12535092 - 12534973
Alignment:
Q  286 gaatattctagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttcta----tagctttgcttccaagtgtgtgta 381  Q
    ||||||| |||| ||| |||||||||||||||||||| |||||| ||||||||| |||||||  || |||||    ||  |||||||||||||||||| |    
T  12535092 gaatattgtagactacttgctttctagttttctaattaaaggactatgcttctgtttttactcgcatttctatatgtaagtttgcttccaagtgtgtgca 12534993  T
Q  382 ctggaaaataataatgtttt 401  Q
    || ||||||||  |||||||    
T  12534992 ctagaaaataacgatgtttt 12534973  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 47569740 - 47569791
Alignment:
Q  294 tagattacatgctttctagttttctaatttaaggaccatgcttctgctttta 345  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  47569740 tagattacatgctttctagttttctaatttaaggactatgtttttgctttta 47569791  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 478 - 536
Target Start/End: Original strand, 12541275 - 12541333
Alignment:
Q  478 tgtttcttgttttatattttctcttcaataatgccttatgattgtcttgacttgtgaca 536  Q
    |||||||||||||||||||||||||  || ||||||||| ||||||||| |||||||||    
T  12541275 tgtttcttgttttatattttctctttgattatgccttatcattgtcttgccttgtgaca 12541333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 28239767 - 28239831
Alignment:
Q  294 tagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctat 358  Q
    |||||||||||||||||||||| |||||||||||||  || || |||||||| || |||||||||    
T  28239767 tagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttctat 28239831  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 454
Target Start/End: Complemental strand, 12531979 - 12531936
Alignment:
Q  411 tattctaatttgatcatgtctgcgtatttggcccatatatgttc 454  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  12531979 tattctaatttgatcgtgtctgcgtatttggccgatatatgttc 12531936  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 12535256 - 12535197
Alignment:
Q  42 ggtggactgttcaaaggtgaaagagttaaggttgctagaaatgtggaagagttgagtttg 101  Q
    |||||||| | |||||||| ||||||||||||||| ||||| ||||||||| ||||||||    
T  12535256 ggtggactatacaaaggtggaagagttaaggttgcaagaaaagtggaagagctgagtttg 12535197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 14508432 - 14508386
Alignment:
Q  298 ttacatgctttctagttttctaatttaaggaccatgcttctgctttt 344  Q
    |||||||||||||| |||||||||| |||||| |||||| |||||||    
T  14508432 ttacatgctttctatttttctaattaaaggactatgcttttgctttt 14508386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 12532829 - 12532769
Alignment:
Q  8 caaacctgatcgtgctggttatcaatccatgaggggtggactgttcaaaggtgaaagagtt 68  Q
    ||||||| ||| |||| ||||||||||| |||| ||||| |||| |||||||| |||||||    
T  12532829 caaacctaatcttgctagttatcaatccgtgagtggtggcctgtccaaaggtggaagagtt 12532769  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 36007987 - 36007875
Alignment:
Q  77 tagaaatgtggaagagttgagtttgtcattttccaatctttttcttggaacat-attactgaggttaattattatgattatatttatttcaagtgtgttc 175  Q
    |||||| ||||||||||||||||||  |||||||  | | ||||| |||| || ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  36007987 tagaaaggtggaagagttgagtttgagattttccgtt-tgtttct-ggaaaatcattactgaggttaattattttgattatatttatttcaagggtgttc 36007890  T
Q  176 ttgtttgaccttagc 190  Q
    ||| |||||||||||    
T  36007889 ttgcttgaccttagc 36007875  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 16375795 - 16375837
Alignment:
Q  294 tagattacatgctttctagttttctaatttaaggaccatgctt 336  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||    
T  16375795 tagattacatgctttgtagttttctaattaaaggatcatgctt 16375837  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 384193 - 384134
Alignment:
Q  301 catgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctatag 360  Q
    |||||||||||||||||||||||| | || ||||||||||||||| || |||||||||||    
T  384193 catgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctatag 384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 384420 - 384373
Alignment:
Q  42 ggtggactgttcaaaggtgaaagagttaaggttgctagaaatgtggaa 89  Q
    ||||||||||||||||||| |||||||||| |||| ||||| ||||||    
T  384420 ggtggactgttcaaaggtggaagagttaagattgcaagaaaggtggaa 384373  T

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