View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12940_high_2 (Length: 461)
Name: NF12940_high_2
Description: NF12940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12940_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 142 - 445
Target Start/End: Original strand, 45540505 - 45540808
Alignment:
| Q |
142 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagagagttcattcaatgagaaaacaaatacaaataacagt |
241 |
Q |
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| T |
45540505 |
ttcttcaactaatgttatttcaaatctcaattcaccaacatccacatatgaattgtcgcaagaaagttcattcaatgagaaaacaaatacaaataacagt |
45540604 |
T |
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| Q |
242 |
gactccgatgatgtagttaaatcatggcaaacccagccatctccatgtgatattgtatcaacaaatgttgaatcacatcacccctttaaagaaattgaga |
341 |
Q |
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| T |
45540605 |
gactccgatgatgtagttaaatcatggcaaacccagccatctccatgtgatattgtatcaacaaatgttgaatcacatcacccctttaaagaaattgaga |
45540704 |
T |
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| Q |
342 |
aaggacaacagggagtggatgatactatccatacggggacatcatcttttccaactttagaaccattaaaccaagaacaaacgtgcgcttctataaatgt |
441 |
Q |
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| T |
45540705 |
aaggacaacagggagtggatgatactatccatacagggacatcatcttttccaactttagaatcattaaaccaagaacaaacgtgcgcttctataaatgt |
45540804 |
T |
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| Q |
442 |
caca |
445 |
Q |
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|||| |
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| T |
45540805 |
caca |
45540808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 45540342 - 45540468
Alignment:
| Q |
18 |
attctcatataccagacatcaaccaagcctccgtgacatcattgtcgtcatcgttccaaaatccattcctaggaccaagtgaggcaaccaacgacactgt |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45540342 |
attctcatataccagacatcaaccaagcccccgtgacatcattgtcgtcatcgttccaaaatccattcataggaccaagtgaggcaaccaacgacactgt |
45540441 |
T |
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| Q |
118 |
tgaggatgacacaaacattggtagttc |
144 |
Q |
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| T |
45540442 |
tgaggatgacacaaacattggtagttc |
45540468 |
T |
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