View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12940_high_4 (Length: 377)
Name: NF12940_high_4
Description: NF12940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12940_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 490121 - 489778
Alignment:
| Q |
18 |
accagcacctctaattccaacttgcaccaaatcttgagcctcaagatattcaaatgactgaattgccccaccattgtttagcatgttaaccaaaccaata |
117 |
Q |
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| T |
490121 |
accagcacctctaattccaacttgcaccaaatcttgagcctcaagatattcaaatgactgaattgccccaccattgtttagcatgttaaccaaaccaata |
490022 |
T |
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| Q |
118 |
ggagcaaacttcaaggactttttaggaaataaagtgactggagaaacagttataagctcaaagttgaatggctccaaagagatttcttcaatttcagacg |
217 |
Q |
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| T |
490021 |
ggagcaaacttcaaggactttttaggaaataaagtgactggagaaacagttataagctcaaagttgaatggctccaaagagatttcttcaatttcagatg |
489922 |
T |
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| Q |
218 |
gagagaaaagtttgagcttcttggcttggctgaaatacaaagcaaaaacttgaactccttcaatgggaattggattctttccactgttccattcaatgtc |
317 |
Q |
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| T |
489921 |
gagagaaaagtttcagcttcttggcttggctgaaatacaaagcaaaaacttgaactccttcaatgggaattggattctttccactgttccattcaatgtc |
489822 |
T |
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| Q |
318 |
tttgatgttgatcttagttgataccgaatgtgaaaactcagaag |
361 |
Q |
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| T |
489821 |
tttgatgttgatcttagttgataccgaatgtgaaaactcagaag |
489778 |
T |
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