View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12940_low_1 (Length: 483)
Name: NF12940_low_1
Description: NF12940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12940_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 138 - 469
Target Start/End: Original strand, 2805081 - 2805412
Alignment:
| Q |
138 |
tgtgactaaaatgcgagtgacaggccataattaagcagtagttgannnnnnnnnaagaataattatgtagttgacagtttaatcgaaaaactaacattaa |
237 |
Q |
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| T |
2805081 |
tgtgactaaaatgcgagtgacaggccataattaagtagtagttgaattttttttaagaataattatgtagttgacagtttaattgaaaaactaacattaa |
2805180 |
T |
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| Q |
238 |
tattttattgacagtttaaagaaatttataatttaaaataannnnnnnnnaaaatgatttataatttaggacagagaagtatgtaaataatattgtatac |
337 |
Q |
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| T |
2805181 |
tatttcattgacagtttaaagaaatttataatttaaaataatttttttt-aaaatgatttataatttaggacagagaagtatgtaaataatactgtatac |
2805279 |
T |
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| Q |
338 |
aaaaatttatttaatacattaagaaattctaccaagcattttattaatttcaccatagg-aaaaaatataagtatttctctaactctcacaacaacgttg |
436 |
Q |
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| T |
2805280 |
aaaaatttatttaatacattaagaaattctaccaagcattttattaatttcaccataggaaaaaaatataagtatttctctaactctcacaacaacgttg |
2805379 |
T |
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| Q |
437 |
cgaatttttgctaagagatgtgatcatatttat |
469 |
Q |
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| T |
2805380 |
tgaatttttgctaagagatgtgatcatatttat |
2805412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 2804874 - 2805006
Alignment:
| Q |
1 |
actatgatactattactattgaggtatactatctcccnnnnnnnattggtactattgtactaagtactaactagtaagtaactaccgacccaccaaagca |
100 |
Q |
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| T |
2804874 |
actatgatactattactattgatgtatactatcttcctttttttattggtactattgtactaagtactaactagtaagtaactaccgacccaccaaagca |
2804973 |
T |
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| Q |
101 |
agacacaaaatcgttgatgtggtcatgttatgt |
133 |
Q |
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| T |
2804974 |
agacacaaaatcgttgatgtggtcatgttatgt |
2805006 |
T |
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