View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12940_low_3 (Length: 401)
Name: NF12940_low_3
Description: NF12940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12940_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 50 - 362
Target Start/End: Original strand, 26562943 - 26563247
Alignment:
| Q |
50 |
aagatcaggtgctgccctcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggca |
149 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26562943 |
aagatcaggtgctgcactcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtttcctaaaggaatggca |
26563042 |
T |
|
| Q |
150 |
gtggtggcactcaatacaggagtcatcaacactgacatgcttgcgtcttgctgcagtgcttcctcatctctctatcaatccccagaatcatgggttttgg |
249 |
Q |
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||| |||||||||||||||||||||||| |||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26563043 |
gtgatggcactcaatacaggagtcatcagcactaacatacttgcgtcttgctacggtgcttcctcatctctctatcaatccccagaatcatgggttttgg |
26563142 |
T |
|
| Q |
250 |
aggcagccactaaaatactcaatcttacacccacaaacaatggtgctnnnnnnnnnnnnnnnnnatttgaagtcactcacctaatctcctagttagatat |
349 |
Q |
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||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
26563143 |
aggaagccaccaaaatactcaatcttacacccacaaacaatggtgct--------tctctctctatttgaagtcactcacctaatctcctagttagaaat |
26563234 |
T |
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| Q |
350 |
ctagctacatgat |
362 |
Q |
| |
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||||||||||||| |
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| T |
26563235 |
ctagctacatgat |
26563247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 26560675 - 26560311
Alignment:
| Q |
19 |
ggataatagtgaatatgtcttcaggttggggaagatcaggtgctgccctcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtc |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||| || ||||||||||| |||||||||||| |||||||| |
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| T |
26560675 |
ggataatagtgaacatgtcttcaggttggggaagatcagttgctgcacttgtagcaccttactgtgtatccaaatgggcaattgaaggacttaccaagtc |
26560576 |
T |
|
| Q |
119 |
tgttgctgaagagtttcctaaaggaatggcagtggtggcactcaatacaggagtcatcaacactgacatgcttgcgtcttgctgcagtgcttcctcatct |
218 |
Q |
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||||| ||||||||| ||||||| |||||||||||||||||||||| |||| |||||||||||| |||||||||| | ||||| |||||||||||||| |
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| T |
26560575 |
tgttgttgaagagttgcctaaagtaatggcagtggtggcactcaatccaggggtcatcaacactaacatgcttgctttttgctatggtgcttcctcatct |
26560476 |
T |
|
| Q |
219 |
ctctatcaatccccagaatcatgggttttggaggcagccactaaaatactcaatcttacacccacaaacaatggtgctnnnnnnnnnnnnnnnnnatttg |
318 |
Q |
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|| |||| || |||||||||||||||||||||||||||||| || ||||||||||||||||| ||| | |||||| || ||||| |
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| T |
26560475 |
ctttatcgattcccagaatcatgggttttggaggcagccaccaagatactcaatcttacaccaacagataatggttct--------tctctctctatttg |
26560384 |
T |
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| Q |
319 |
aagtcactcacctaatctcctagttagatatctagctacatgattgattatcaactttatttgtattagtatt |
391 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
26560383 |
aagtcactcacctaatctcctagctagatatctacttacatgattgattatcgacttgatttgtattagtatt |
26560311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 24890134 - 24889857
Alignment:
| Q |
19 |
ggataatagtgaatatgtcttcaggttggggaagatcaggtgctgccctcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtc |
118 |
Q |
| |
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||||||||||||| |||||||| |||||||||||||||||||| || || ||||||||||| | |||||||||||||| ||||||||||||||| ||||| |
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| T |
24890134 |
ggataatagtgaacatgtcttctggttggggaagatcaggtgcagcacttgtagcaccttattgtgcatccaaatgggcaattgaaggactcactaagtc |
24890035 |
T |
|
| Q |
119 |
tgttgctgaagagtttcctaaaggaatggcagtggtggcactcaatacaggagtcatcaacactgacatgcttgcgtcttgctgcagtgcttcctcatct |
218 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| || |||| ||||||||||||| |
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| T |
24890034 |
tgttgctgaagagttgcctaaaggaatggcagtagtggcactgaatccaggagtcatcaacactgacatgcttgcttcatgctatggtgcttcctcatcg |
24889935 |
T |
|
| Q |
219 |
ctctatcaatccccagaatcatgggttttggaggcagccactaaaatactcaatcttacacccacaaacaatggtgct |
296 |
Q |
| |
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|| |||||||||||||||||||||| || ||||||||||| || ||||||||||||||||| || ||||||||||| |
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| T |
24889934 |
ctttatcaatccccagaatcatgggcttcagaggcagccaccaagatactcaatcttacacctgcagacaatggtgct |
24889857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 56436944 - 56437152
Alignment:
| Q |
34 |
tgtcttcaggttggggaagatcaggtgctgccctcgtagcaccttactttgcatccaaatgggaaattgaaggactcaccaagtctgttgctgaagagtt |
133 |
Q |
| |
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||||||| |||||||||||||| ||||| || || || || ||||||| |||||||||||||| |||||||||||||| |||||||| ||| ||||||| |
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| T |
56436944 |
tgtcttctggttggggaagatcgggtgcagcacttgttgctccttactgtgcatccaaatgggctattgaaggactcacaaagtctgtagctaaagagtt |
56437043 |
T |
|
| Q |
134 |
tcctaaaggaatggcagtggtggcactcaatacaggagtcatcaacactgacatgcttgcgtcttgctgcagtgcttcctcatctctctatcaatcccca |
233 |
Q |
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|| |||||||||| || || ||||||||| | || ||||||||||||||||||||||| ||||||| |||||||| | ||||| ||||||||||| |
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| T |
56437044 |
accacaaggaatggctgttgtcgcactcaatcctggtgtcatcaacactgacatgcttgcttcttgctttggtgcttccgcttctctttatcaatcccct |
56437143 |
T |
|
| Q |
234 |
gaatcatgg |
242 |
Q |
| |
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||||||||| |
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| T |
56437144 |
gaatcatgg |
56437152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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