View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12940_low_5 (Length: 284)
Name: NF12940_low_5
Description: NF12940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12940_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 1335547 - 1335816
Alignment:
| Q |
7 |
tcgaagaatatgtacaataacattcgattgnnnnnnnacacgctatatgttggttttataagctatctttgaggacttatgaaaattgtcataggctgct |
106 |
Q |
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| T |
1335547 |
tcgaagaatatgtacaataacattcgattgtttttttacacactatatgttcgttttataaattatctttgaggacttatgaaaattgtcataggctgct |
1335646 |
T |
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| Q |
107 |
tttgtaagctctcttaaatagtctcacaaaagtatgtcaatagagttcaaataagacaatccaaacaagtctcattgaatgttggcgcataaaagtgtat |
206 |
Q |
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| T |
1335647 |
tttgtaagctctcttaaatagtctcacaaaattatgtcaatagagttcaaataagacaatccaaacaagtctcattgaatgttagcgcataaaagtgtat |
1335746 |
T |
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| Q |
207 |
gtccattggactctttacttaagtagtcaaattcttatattttgtggtgatcactccggagccttggagt |
276 |
Q |
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| T |
1335747 |
gtccattggactctttacttaagtagtcaaattcttatattttgtggtgagcactccggaaccttggagt |
1335816 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 36142057 - 36141984
Alignment:
| Q |
46 |
acgctatatgttggttttataagctatctttgaggacttatgaaaattgtcataggctgcttttgtaagctctc |
119 |
Q |
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| T |
36142057 |
acgctatatgttggttttataagtaatatttggggacttatgaaaattgtcgtaagctgtttttataagctctc |
36141984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 36141924 - 36141857
Alignment:
| Q |
196 |
taaaagtgtatgtccattggactctttactt--aagtagtcaaattcttatattttgtggtgatcact |
261 |
Q |
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| T |
36141924 |
taaaagtgtatgtccattagactctttactttaaagtagtcaaattcttaaattttatggtgagcact |
36141857 |
T |
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