View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12940_low_6 (Length: 247)
Name: NF12940_low_6
Description: NF12940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12940_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 35446133 - 35445919
Alignment:
| Q |
16 |
atggaagaagtggtcagtccaattttctctccttgtagcatgagaaaatatgtgatttccaactaaaggagaaccaaaagtaatacagatgggagggata |
115 |
Q |
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| T |
35446133 |
atggaagaagtggtcagtccaattttctctccttgtagcatgagaaaatatgtgatttccaactaaaggagaaccaaaagtaatacagatgggagggata |
35446034 |
T |
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| Q |
116 |
cgatcggggaattttgtagttgggaagtttactaaggcccaaagtgctgccagaatagccactggaccaccagacgagtgtcctgcaaacactatctgct |
215 |
Q |
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| T |
35446033 |
cgatcggggaattttgtagttgggaagtttactaaggcccaaagtgctgccagaatagccactggaccaccagacgagtgtcctgcaaacactatctgct |
35445934 |
T |
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| Q |
216 |
tcttcttcttcattg |
230 |
Q |
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| T |
35445933 |
tcttcttcttcattg |
35445919 |
T |
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