View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12940_low_7 (Length: 245)
Name: NF12940_low_7
Description: NF12940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12940_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 1336167 - 1336034
Alignment:
| Q |
18 |
gttttttcatttgagctgtttcgttctgttcatctcttaagtcataattggatttgtgtttggttcaattttcagttttgcaattttatgttttgtgaac |
117 |
Q |
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| T |
1336167 |
gttttttcatttgagctgtttcgttctgttcatctcttaagtcataattcgatttgtgtttgtttcaattttcagttttgcaattttatgttttgtgaac |
1336068 |
T |
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| Q |
118 |
atcaaatttgcattcctttagcaaggagattcta |
151 |
Q |
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| T |
1336067 |
atcaaatttgcattcctttagcaaggagattcta |
1336034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 1336010 - 1335942
Alignment:
| Q |
174 |
acacatggtcaactgtgcttatttcattgcaacatttactcattagaatggattgtcactttgatgact |
242 |
Q |
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| T |
1336010 |
acacatggtcaactgtgcttatttcattgcaacatttactcattagaatggattgtcactttgatgact |
1335942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 22473586 - 22473638
Alignment:
| Q |
34 |
tgtttcgttctgttcatctcttaagtcataattggatttgtgtttggttcaat |
86 |
Q |
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| T |
22473586 |
tgtttctttctgttcatttcttaagtcataataggatttgtgtttgtttcaat |
22473638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 22477947 - 22478012
Alignment:
| Q |
86 |
ttttcagttttgcaattttatgttttgtgaacatcaaatttgcattcctttagcaaggagattcta |
151 |
Q |
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| T |
22477947 |
ttttcagttttaaaattttatctgtcgtgaacatcaaatttgtactcctttagtaaggagattcta |
22478012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 22455030 - 22455070
Alignment:
| Q |
34 |
tgtttcgttctgttcatctcttaagtcataattggatttgt |
74 |
Q |
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| T |
22455030 |
tgtttctttctgttcatttcttaagtcataataggatttgt |
22455070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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