View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12941_high_10 (Length: 253)

Name: NF12941_high_10
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12941_high_10
NF12941_high_10
[»] chr7 (11 HSPs)
chr7 (127-236)||(859386-859495)
chr7 (127-236)||(1220663-1220772)
chr7 (127-236)||(1217390-1217499)
chr7 (127-241)||(13886412-13886526)
chr7 (127-241)||(13882910-13883022)
chr7 (135-241)||(4300314-4300420)
chr7 (127-172)||(4888947-4888992)
chr7 (135-172)||(4303215-4303252)
chr7 (127-164)||(29175573-29175610)
chr7 (135-171)||(1883298-1883334)
chr7 (127-171)||(30217608-30217652)
[»] chr2 (12 HSPs)
chr2 (126-241)||(15129167-15129282)
chr2 (135-241)||(27952550-27952656)
chr2 (135-241)||(27956386-27956492)
chr2 (135-237)||(31636093-31636195)
chr2 (127-241)||(33655376-33655490)
chr2 (127-236)||(22011182-22011291)
chr2 (157-236)||(31633884-31633963)
chr2 (126-241)||(22264185-22264299)
chr2 (127-241)||(35682004-35682117)
chr2 (175-236)||(2155765-2155826)
chr2 (189-237)||(8781323-8781371)
chr2 (175-236)||(2165721-2165782)
[»] chr3 (9 HSPs)
chr3 (127-241)||(43304183-43304297)
chr3 (127-236)||(43306902-43307011)
chr3 (127-241)||(53012778-53012890)
chr3 (134-228)||(3069113-3069207)
chr3 (127-241)||(3063962-3064078)
chr3 (127-171)||(365846-365890)
chr3 (175-229)||(45168530-45168584)
chr3 (140-171)||(2472952-2472983)
chr3 (176-215)||(19795067-19795106)
[»] chr8 (11 HSPs)
chr8 (130-241)||(42891896-42892007)
chr8 (127-241)||(22512273-22512387)
chr8 (145-241)||(23573351-23573447)
chr8 (145-237)||(23570355-23570447)
chr8 (169-241)||(18468508-18468580)
chr8 (152-233)||(6845112-6845193)
chr8 (140-228)||(37189630-37189717)
chr8 (175-241)||(22922076-22922142)
chr8 (140-228)||(18180926-18181013)
chr8 (127-172)||(24730821-24730866)
chr8 (152-213)||(42890182-42890243)
[»] chr1 (7 HSPs)
chr1 (127-241)||(50857670-50857783)
chr1 (127-234)||(13444217-13444324)
chr1 (127-195)||(13441860-13441928)
chr1 (189-241)||(42071546-42071598)
chr1 (175-236)||(8931022-8931083)
chr1 (127-171)||(31915338-31915382)
chr1 (140-171)||(43681261-43681292)
[»] chr4 (7 HSPs)
chr4 (130-241)||(22691060-22691171)
chr4 (140-238)||(22988694-22988792)
chr4 (140-236)||(22716425-22716521)
chr4 (145-235)||(6659561-6659651)
chr4 (126-241)||(24667430-24667551)
chr4 (140-237)||(13085321-13085417)
chr4 (136-229)||(19935267-19935359)
[»] chr5 (5 HSPs)
chr5 (127-241)||(21849196-21849310)
chr5 (145-236)||(40779017-40779108)
chr5 (127-229)||(21857122-21857224)
chr5 (127-229)||(21845127-21845229)
chr5 (169-236)||(19501180-19501247)
[»] chr6 (6 HSPs)
chr6 (135-215)||(29341043-29341123)
chr6 (140-233)||(11194429-11194521)
chr6 (127-241)||(18726883-18726995)
chr6 (147-212)||(18203253-18203318)
chr6 (135-171)||(8050125-8050161)
chr6 (183-231)||(11190305-11190353)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 859495 - 859386
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  859495 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 859396  T
Q  227 ttcggcccac 236  Q
    ||||||||||    
T  859395 ttcggcccac 859386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 1220772 - 1220663
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1220772 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1220673  T
Q  227 ttcggcccac 236  Q
    ||||||||||    
T  1220672 ttcggcccac 1220663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 1217499 - 1217390
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1217499 tgatgcaggagggttttattagtaattcagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1217400  T
Q  227 ttcggcccac 236  Q
    ||||||||||    
T  1217399 ttcggcccac 1217390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 13886526 - 13886412
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||| |||||||||||||    
T  13886526 tgatgcagaagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaactctctattattattacgttttattttat 13886427  T
Q  227 ttcggcccacaggtt 241  Q
    || ||||||| ||||    
T  13886426 tttggcccacgggtt 13886412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 13883022 - 13882910
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||  ||||| |||||| |||||||||||||    
T  13883022 tgatgcaggagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaac--tctattattattacgttttattttat 13882925  T
Q  227 ttcggcccacaggtt 241  Q
    || ||||||| ||||    
T  13882924 tttggcccacgggtt 13882910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 4300314 - 4300420
Alignment:
Q  135 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 234  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| ||||| |||||| ||||||||||||||| |||||    
T  4300314 gagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctaaaactctctattattattacgttttattttattttggccc 4300413  T
Q  235 acaggtt 241  Q
    || ||||    
T  4300414 acgggtt 4300420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 4888992 - 4888947
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattattta 172  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  4888992 tgatgcaggagaattttattagtaatttagtagtatttattattta 4888947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 4303215 - 4303252
Alignment:
Q  135 gaggattttattagtaatttagtagtatttattattta 172  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4303215 gagggttttattagtaatttagtagtatttattattta 4303252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 29175573 - 29175610
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtattt 164  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  29175573 tgatgcaggagggttttattagtaatttagtagtattt 29175610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 1883298 - 1883334
Alignment:
Q  135 gaggattttattagtaatttagtagtatttattattt 171  Q
    |||| |||||||||||| |||||||||||||||||||    
T  1883298 gagggttttattagtaacttagtagtatttattattt 1883334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 30217608 - 30217652
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattattt 171  Q
    ||||||| |||| |||||| | |||||||||||||||||||||||    
T  30217608 tgatgcaagagggttttataactaatttagtagtatttattattt 30217652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 15129167 - 15129282
Alignment:
Q  126 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttatttta 225  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  15129167 atgatgcaggagggttttattaataatttagtagtatttattatttaaccaaatcttagtaattttctagaacttcctattattatttcgttttatttta 15129266  T
Q  226 tttcggcccacaggtt 241  Q
    ||||||||||| ||||    
T  15129267 tttcggcccacgggtt 15129282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 27952656 - 27952550
Alignment:
Q  135 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 234  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  27952656 gagggttttattaataatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttattttggccc 27952557  T
Q  235 acaggtt 241  Q
    || ||||    
T  27952556 acgggtt 27952550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 27956492 - 27956386
Alignment:
Q  135 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 234  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||    
T  27956492 gagggttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttattttagccc 27956393  T
Q  235 acaggtt 241  Q
    || ||||    
T  27956392 acgggtt 27956386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 31636093 - 31636195
Alignment:
Q  135 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 234  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  31636093 gagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttattttggccc 31636192  T
Q  235 aca 237  Q
    |||    
T  31636193 aca 31636195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 33655376 - 33655490
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  33655376 tgatgcaggagggttttattggtaatttagtagtatctattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttat 33655475  T
Q  227 ttcggcccacaggtt 241  Q
    |||||||||| ||||    
T  33655476 ttcggcccacgggtt 33655490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 22011182 - 22011291
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| ||||||   |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  22011182 tgatgcaggagggttttatctttaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 22011281  T
Q  227 ttcggcccac 236  Q
    || |||||||    
T  22011282 tttggcccac 22011291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 31633884 - 31633963
Alignment:
Q  157 tagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 236  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  31633884 tagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcattttattttatttcggcccac 31633963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 22264185 - 22264299
Alignment:
Q  126 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttatttta 225  Q
    ||||||||  |||||||| ||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||| ||||||| ||||| |||||    
T  22264185 atgatgcagaaggattttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctattattattttgttttgtttta 22264283  T
Q  226 tttcggcccacaggtt 241  Q
    ||||||| ||| ||||    
T  22264284 tttcggctcacgggtt 22264299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 35682004 - 35682117
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| |||| ||||||||||  ||||||||  | |||| ||||||||||||||||||||| ||||||||||  |||||||||||| ||||||    
T  35682004 tgatgcaggagggttttcttagtaattttatagtattttat-tttagccaaatcttagtaattttctagaactttctattgttatttcgttttgttttat 35682102  T
Q  227 ttcggcccacaggtt 241  Q
    || | ||||||||||    
T  35682103 ttggacccacaggtt 35682117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 2155765 - 2155826
Alignment:
Q  175 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 236  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| |||||||    
T  2155765 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccac 2155826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 8781323 - 8781371
Alignment:
Q  189 tttctataactttctatgattatttcgttttattttatttcggcccaca 237  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||||    
T  8781323 tttctagaactttctattattatttcgttttgttttatttcggcccaca 8781371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 2165721 - 2165782
Alignment:
Q  175 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 236  Q
    ||||||||||| ||||| || |||||| ||| ||||||| ||||| |||||||| |||||||    
T  2165721 caaatcttagtgattttttagaactttgtattattattttgttttgttttattttggcccac 2165782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 43304297 - 43304183
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  43304297 tgatgcaggagggttttattagtaatttagtagcatttattatttagccaaatcttagtaattttctataactttctattagtatttcgttttattttat 43304198  T
Q  227 ttcggcccacaggtt 241  Q
    || ||||||| ||||    
T  43304197 tttggcccacgggtt 43304183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 43307011 - 43306902
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  43307011 tgatgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaacattctattattatttcgttttattttat 43306912  T
Q  227 ttcggcccac 236  Q
    || |||||||    
T  43306911 tttggcccac 43306902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 53012778 - 53012890
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||  ||||| ||||||  ||||||||||||    
T  53012778 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaac--tctattattattatgttttattttat 53012875  T
Q  227 ttcggcccacaggtt 241  Q
    ||  |||||| ||||    
T  53012876 tttagcccacgggtt 53012890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 3069207 - 3069113
Alignment:
Q  134 cgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 228  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||  |||| |||||| |||||||||||||||    
T  3069207 cgagggttttattagtaatttagtagtatttattatttagccaaatctttgtaattctctagaactcactattattattacgttttattttattt 3069113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 3064078 - 3063962
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgat--tatttcgttttatttt 224  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||   ||| ||  |||| |||||||||||    
T  3064078 tgatgcaggagggttttgttagtaatttagtagtatttattatttagccaaatcttagtaattctctagaactcgttattattatattacgttttatttt 3063979  T
Q  225 atttcggcccacaggtt 241  Q
    |||| ||||||| ||||    
T  3063978 attttggcccacgggtt 3063962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 365890 - 365846
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattattt 171  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  365890 tgatgcaggaggattttattagtaatttagtagtatttattattt 365846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 45168584 - 45168530
Alignment:
Q  175 caaatcttagtaattttctataactttctatgattatttcgttttattttatttc 229  Q
    ||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  45168584 caaattttagtaattttctaaaaccttctattattatttcgttttattttatttc 45168530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 171
Target Start/End: Complemental strand, 2472983 - 2472952
Alignment:
Q  140 ttttattagtaatttagtagtatttattattt 171  Q
    ||||||||||||||||||||||||||||||||    
T  2472983 ttttattagtaatttagtagtatttattattt 2472952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 19795067 - 19795106
Alignment:
Q  176 aaatcttagtaattttctataactttctatgattatttcg 215  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  19795067 aaatcttagtaattttctagaactttctattattatttcg 19795106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 42892007 - 42891896
Alignment:
Q  130 tgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 229  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||     
T  42892007 tgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaactttctattattatttcgttttattttatttt 42891908  T
Q  230 ggcccacaggtt 241  Q
     |||||| ||||    
T  42891907 agcccacgggtt 42891896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 22512387 - 22512273
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||| |||||||||||| |||||||    
T  22512387 tgatgcaggagagttttattagtaatttagtagtatttattatttagctaaatcttagtaattttctagaactttatattattatttcgtttcattttat 22512288  T
Q  227 ttcggcccacaggtt 241  Q
    |||||||||||||||    
T  22512287 ttcggcccacaggtt 22512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 145 - 241
Target Start/End: Original strand, 23573351 - 23573447
Alignment:
Q  145 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 241  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  23573351 ttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttatttcgttttattttatttcggctcacaggtt 23573447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 23570355 - 23570447
Alignment:
Q  145 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccaca 237  Q
    ||||||||||  ||||||||||||||||  |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||    
T  23570355 ttagtaattttatagtatttattatttaatcaaatcttagtaattttctagaactttctatttttatttcgttttattttatttcgacccaca 23570447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 18468508 - 18468580
Alignment:
Q  169 tttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 241  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  18468508 tttaaccaaatcttagtaattttctagaactttctattattatttcgttttgttttattttggcccacgggtt 18468580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 233
Target Start/End: Original strand, 6845112 - 6845193
Alignment:
Q  152 tttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcc 233  Q
    |||| ||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||| ||||| ||||||||| ||||    
T  6845112 tttattagtatttattatttagtcaaatcttagtaattttctaaaactctctattattattacgtttgattttattttggcc 6845193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 37189630 - 37189717
Alignment:
Q  140 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 228  Q
    |||| ||||||||||||||||||||  | |||| |||||||||||||| ||| || |||||| ||| ||||||| ||||||||||||||    
T  37189630 ttttcttagtaatttagtagtattttat-tttagccaaatcttagtaactttttagaactttatattattattttgttttattttattt 37189717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 22922142 - 22922076
Alignment:
Q  175 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 241  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| ||||||| ||||    
T  22922142 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccacgggtt 22922076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 18181013 - 18180926
Alignment:
Q  140 ttttattagtaatttagtagtatttattatttatc-caaatcttagtaattttctataactttctatgattatttcgttttattttattt 228  Q
    |||| ||||||||||||||||||||  |||||| | ||||||||| ||||||| || || |||||||  |||||||||||| ||||||||    
T  18181013 ttttcttagtaatttagtagtattt--tatttaactcaaatcttaataattttttagaaatttctattcttatttcgttttgttttattt 18180926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 24730821 - 24730866
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattattta 172  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||||    
T  24730821 tgatgcaggagggttttattagtaatttagtagtatttatgattta 24730866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 42890182 - 42890243
Alignment:
Q  152 tttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattattt 213  Q
    |||| |||||| ||||||||| ||||||   |||||||||||| |||||||||| |||||||    
T  42890182 tttattagtatctattatttagccaaatggaagtaattttctagaactttctattattattt 42890243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 50857783 - 50857670
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  50857783 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttgttttat 50857684  T
Q  227 ttcggcccacaggtt 241  Q
    || ||||||| ||||    
T  50857683 tt-ggcccacgggtt 50857670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 13444324 - 13444217
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | || ||||||| ||||||||||||||||||||    
T  13444324 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaattttagtaattttcaagaattttctattattatttcgttttattttat 13444225  T
Q  227 ttcggccc 234  Q
    || |||||    
T  13444224 tttggccc 13444217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 13441928 - 13441860
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctat 195  Q
    |||||||  ||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  13441928 tgatgcagaagggttttgttagtaatttagtagtatttattatttagccaaatcatagtaattttctat 13441860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 42071598 - 42071546
Alignment:
Q  189 tttctataactttctatgattatttcgttttattttatttcggcccacaggtt 241  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| |||||    
T  42071598 tttctagaactttctattattatttcgttttattttatttcggcccaaaggtt 42071546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 8931022 - 8931083
Alignment:
Q  175 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 236  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| |||||||    
T  8931022 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccac 8931083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 31915338 - 31915382
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattattt 171  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||    
T  31915338 tgatgcatgagggttttattagtaatttagtagtatttattattt 31915382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 171
Target Start/End: Original strand, 43681261 - 43681292
Alignment:
Q  140 ttttattagtaatttagtagtatttattattt 171  Q
    ||||||||||||||||||||||||||||||||    
T  43681261 ttttattagtaatttagtagtatttattattt 43681292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 22691060 - 22691171
Alignment:
Q  130 tgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 229  Q
    |||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  22691060 tgcaggagggttttattaataatttagtagtatttattatttagccaaatcttagtaattttctagaactttgtattattatttcgttttattttatttc 22691159  T
Q  230 ggcccacaggtt 241  Q
     |||||| ||||    
T  22691160 agcccactggtt 22691171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 22988792 - 22988694
Alignment:
Q  140 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacag 238  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||||||| ||||||||    
T  22988792 ttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttcagcccacag 22988694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 22716425 - 22716521
Alignment:
Q  140 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 236  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||||||| ||||||    
T  22716425 ttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttcagcccac 22716521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 6659651 - 6659561
Alignment:
Q  145 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccca 235  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  6659651 ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttatttcggccca 6659561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 24667430 - 24667551
Alignment:
Q  126 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttcta-taa-----ctttctatgattatttcgtttt 219  Q
    |||||||| ||||  ||||||| ||||||||||||| |||||||||| ||||||| |||||||||| || |||     |||||||| |||||||| ||||    
T  24667430 atgatgcaggagggctttattattaatttagtagtagttattatttagccaaatcgtagtaattttttagtaattcatctttctattattatttcatttt 24667529  T
Q  220 attttatttcggcccacaggtt 241  Q
    |||||||||||| |||| ||||    
T  24667530 attttatttcggtccacgggtt 24667551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 13085417 - 13085321
Alignment:
Q  140 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccaca 237  Q
    |||| ||||||||||  ||||||||  | |||| ||| ||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||| ||||    
T  13085417 tttttttagtaattttatagtattttat-tttagccacatcttagtaatattctagaactttctattattatttcgttttgttttatttcggctcaca 13085321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 19935267 - 19935359
Alignment:
Q  136 aggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 229  Q
    |||||||| ||||||||||||||||||||  | ||||  ||||||||| | |||||  | |||||||||| ||||||||||||| |||||||||    
T  19935267 aggattttcttagtaatttagtagtattttat-tttagtcaaatcttaatcatttttcagaactttctattattatttcgttttgttttatttc 19935359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 21849310 - 21849196
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21849310 tgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21849211  T
Q  227 ttcggcccacaggtt 241  Q
    |||||||||| ||||    
T  21849210 ttcggcccacgggtt 21849196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 40779108 - 40779017
Alignment:
Q  145 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 236  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  40779108 ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttatttcggcccac 40779017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 21857224 - 21857122
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21857224 tgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21857125  T
Q  227 ttc 229  Q
    |||    
T  21857124 ttc 21857122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 21845229 - 21845127
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21845229 tgatgcaagagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21845130  T
Q  227 ttc 229  Q
    |||    
T  21845129 ttc 21845127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 19501247 - 19501180
Alignment:
Q  169 tttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 236  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||    
T  19501247 tttacccaaatcttagtaattttctaaaactttctattattattttgttttgttttatttcggcccac 19501180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 29341123 - 29341043
Alignment:
Q  135 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcg 215  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||    
T  29341123 gagggttttattagtaatttagtagtatttattttttagccaaatcttagtaattttctaaaactttctattattatttcg 29341043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 11194429 - 11194521
Alignment:
Q  140 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcc 233  Q
    |||| ||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||  ||||||| ||||| |||||||||||||    
T  11194429 ttttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctagtattattttgttttgttttatttcggcc 11194521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 241
Target Start/End: Original strand, 18726883 - 18726995
Alignment:
Q  127 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 226  Q
    ||||||| |||| |||| ||||||||||  |||| |||  | |||| |||||||||||| |||||||| |||||||||| ||||||||||||| ||||||    
T  18726883 tgatgcaggagggtttttttagtaattttatagttttttat-tttagccaaatcttagtcattttctagaactttctattattatttcgtttt-ttttat 18726980  T
Q  227 ttcggcccacaggtt 241  Q
    |||||||||| ||||    
T  18726981 ttcggcccacgggtt 18726995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 18203253 - 18203318
Alignment:
Q  147 agtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatt 212  Q
    ||||||||  ||||||||||||||||  |||||||||||||||||||| |||| ||||| ||||||    
T  18203253 agtaattttatagtatttattatttagtcaaatcttagtaattttctagaactctctattattatt 18203318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 8050161 - 8050125
Alignment:
Q  135 gaggattttattagtaatttagtagtatttattattt 171  Q
    |||| |||| |||||||||||||||||||||||||||    
T  8050161 gaggtttttcttagtaatttagtagtatttattattt 8050125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 11190305 - 11190353
Alignment:
Q  183 agtaattttctataactttctatgattatttcgttttattttatttcgg 231  Q
    |||||||||||| |||||||||| ||||| | ||||| |||||||||||    
T  11190305 agtaattttctagaactttctattattatattgttttgttttatttcgg 11190353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University