View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12941_high_3 (Length: 356)
Name: NF12941_high_3
Description: NF12941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12941_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 10201031 - 10200703
Alignment:
| Q |
9 |
gacatcatcacctgaatcaaagaagcagccgatcgagaagcaccagcaaaagcaccaataggtacaaacaaatgaggaaaagcaggagtacacatctcca |
108 |
Q |
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| T |
10201031 |
gacatcataacctgaatcaaagaagcagccgatcgagaagcaccagcaaaagcaccaataggtacaaacaaatgaggaaaagcaggagtacacatctcca |
10200932 |
T |
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| Q |
109 |
aaccaaacgcagcattttcaagaagatcagcaaacaatctccaccctttaggattaacatcaaaatgcctcccaaaatccgacaacaaaatcttactaag |
208 |
Q |
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| T |
10200931 |
aaccaaacgcagcattttcaagaagatcagcaaacaatctccaccctttaggattaacatcaaaatgcctcccgaaatccgacaacaaaatcttactaag |
10200832 |
T |
|
| Q |
209 |
atacccaattccatctttcagcacccaattaatagcagcagcagtaggaatagcccctttccccaatccaacagcatatagcaaagcttgagttgccaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10200831 |
atacccaattccatctttcagcacccaattaatagcagcagcagtaggaatagcccctttccccaatccaacagcatatagcaaagcttgagttgccaac |
10200732 |
T |
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| Q |
309 |
actccactcacctgacaagcaacaccttg |
337 |
Q |
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| T |
10200731 |
actccactcacctgacaagcaacaccttg |
10200703 |
T |
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